Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0635
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   1e-11
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)                     32   0.34 
SB_41424| Best HMM Match : TBCC (HMM E-Value=0.57)                     29   2.4  
SB_8228| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_20703| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   9.6  
SB_14077| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   9.6  
SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)            27   9.6  

>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 27/54 (50%), Positives = 40/54 (74%)
 Frame = +2

Query: 8   ELTLDQVIISPPRLYRIEEIPRDELNLQEDEMLVPCAHFYKQVYATFGIPFYAR 169
           ++ L+ ++    R++RIEEIP DE++L+ DE+L+P AHF K+VY TFG PF  R
Sbjct: 814 DVPLEHLVSQGQRIFRIEEIPSDEIDLKTDEILIPVAHFNKEVYQTFGTPFLVR 867


>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
          Length = 1845

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +2

Query: 236  KEWEKYNFAVVTNGRPNYISEGATVNINDFRLSSNTNLSHPDATARPWFGLEHINKTPKR 415
            K+++KYN +  TN + +   EG++VN   +RLS        D + + W  L +I   P R
Sbjct: 1168 KDYKKYNSSKATNEKADSDEEGSSVNDITWRLS--------DRSVQFWLALLYIPSLP-R 1218

Query: 416  SRVNYLEKAIKI 451
              VN     I+I
Sbjct: 1219 QNVNNASTNIRI 1230


>SB_41424| Best HMM Match : TBCC (HMM E-Value=0.57)
          Length = 285

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +2

Query: 17  LDQVIISPPRLYRIEEIPRDELNLQEDEMLVPCAHFYKQVYATFGIPFYARFKHNEPFEA 196
           L+  + +  + YR+   P    NL  D  + P   +   V     + ++ +  HN    A
Sbjct: 131 LNMSVWAAQQAYRVMVAPATRPNL--DITVQPMQAYTSDVIVGPNVVYHVKLAHNCESSA 188

Query: 197 VKDRLQKKLDIPDK 238
           V +  +  LDIPDK
Sbjct: 189 VAETSEIVLDIPDK 202


>SB_8228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 47  LYRIEEIPRDELNLQEDEMLVPCAHFYKQVYATFGIPFYARFKHNEPFEAVKDRLQK 217
           LYR   +P  E  LQ  E+    A  Y Q Y  F +  +A     +   +++D  +K
Sbjct: 49  LYRATHVPIGEDQLQHLELTRELARIYNQTYGNFFMQPHAILGSTQRVMSLRDPTKK 105


>SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 325 EIVDIHCRSFAYVIRSAVCHYSKVVLFP 242
           E++   CRSF      A+ HY K +L P
Sbjct: 30  EMIKDFCRSFKVAEEEALLHYVKTLLLP 57


>SB_20703| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 693

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
 Frame = +2

Query: 131 QVYATFGIPFYARFKHNEPFEAVKDRLQKKLDI---PDKEWEKYNFAVVTNGRPNYISEG 301
           QVY   G   Y   KH E  E  +  LQ  +      D+   + N   V   + NY  E 
Sbjct: 13  QVYLRKGNELYDLGKHREALEQYQQALQVYISTGNESDQADVRLNIGAVYQSKGNY-EEA 71

Query: 302 ATVNINDFRLSSNTNLSHPDATARPWFGLEHINKTPKRSRVNYLEKAIKIY 454
                   ++  +T      A  R   GL   +       + Y ++A+++Y
Sbjct: 72  MKYCQQALQVYISTGNESKQADVRQSIGLVQQSLGNYEEAIKYYQQALQVY 122


>SB_14077| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 357

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
 Frame = +2

Query: 131 QVYATFGIPFYARFKHNEPFEAVKDRLQKKLDI---PDKEWEKYNFAVVTNGRPNYISEG 301
           QVY   G   Y   KH E  E  +  LQ  +      D+   + N   V   + NY  E 
Sbjct: 13  QVYLRKGNELYDLGKHREALEQYQQALQVYISTGNESDQADVRLNIGAVYQSKGNY-EEA 71

Query: 302 ATVNINDFRLSSNTNLSHPDATARPWFGLEHINKTPKRSRVNYLEKAIKIY 454
                   ++  +T      A  R   GL   +       + Y ++A+++Y
Sbjct: 72  MKYCQQALQVYISTGNESKQADVRQSIGLVQQSLGNYEEAIKYYQQALQVY 122


>SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)
          Length = 646

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = +3

Query: 111 RVRISTSKYTRRSEFRFTRVSNTTNRSKLSKIAYRRNSTYPTKNGKSTTLL 263
           R+ +  S+Y       F+R   + N+    +  Y++N+ + +K+ K+   +
Sbjct: 500 RINVDLSRYCACYHISFSRYVKSCNQLMEERAFYQKNNCFSSKSSKNNAFI 550


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,227
Number of Sequences: 59808
Number of extensions: 310281
Number of successful extensions: 1031
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)