Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0635
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   7.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 168 VSNTTNRSKLSKIAYRRNSTYPTKN 242
           +S  +NRS+ S    RR ST+ + N
Sbjct: 34  ISRNSNRSESSGYCGRRPSTFGSSN 58


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 168 VSNTTNRSKLSKIAYRRNSTYPTKN 242
           +S  +NRS+ S    RR ST+ + N
Sbjct: 34  ISRNSNRSESSGYCGRRPSTFGSSN 58


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 332 SSNTNLSHPDATARPWFGLEHINKTP 409
           S  T L     T   W GLEH N  P
Sbjct: 737 SLRTLLQRGQETGAEWPGLEHANIGP 762


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 125 RNAHTEPASHPLVN 84
           +N HT P+  P+ N
Sbjct: 23  QNVHTRPSKEPICN 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,524
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)