Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0631
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.0  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 75 PFCIFNQSCYLFLKQ 31
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 144 PCWKTPTQEYVVPRSIPTAGALSPFCIFNQSC 49
           P W T + E  V    P A  +S     NQ+C
Sbjct: 614 PQWHTRSTEKRVSAGTPAAFNISTTIYENQNC 645


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 46  VTRLIKNTKWRKSTRSRN 99
           V  LIKNT+  KS    N
Sbjct: 408 VNNLIKNTRCAKSNNQNN 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,045
Number of Sequences: 438
Number of extensions: 3123
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)