Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0628
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346...    29   1.8  

>08_02_0654 -
           19732679-19732837,19733234-19733479,19734470-19734667,
           19735085-19735201,19735289-19735459,19735632-19735893,
           19736205-19736353
          Length = 433

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 442 FPTCCTVKAPYARLLHSW 495
           F TCC VK P+ +LLH++
Sbjct: 343 FVTCCQVKLPFEKLLHAF 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,206,866
Number of Sequences: 37544
Number of extensions: 140507
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)