Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0626
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0386 + 18429675-18430679,18431001-18431111,18431139-184311...    30   1.2  
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289...    30   1.2  
06_01_0317 + 2281564-2283855                                           29   2.8  
06_03_0371 - 19990168-19990584                                         27   8.5  

>12_02_0386 +
           18429675-18430679,18431001-18431111,18431139-18431195,
           18431552-18431589,18431688-18431733,18431811-18431849
          Length = 431

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 294 WNTIVAFCTAV*STCRRIGKFHYFKRTGSKPDSAS 190
           WNT++A C+   S    +  F+  + TG +PD+A+
Sbjct: 71  WNTMIAACSEEGSLADTVKVFNRMRATGFEPDAAT 105


>01_06_0837 -
           32328191-32328369,32328682-32328731,32328844-32328923,
           32329193-32329345,32329505-32329654,32329877-32330000,
           32330086-32330198,32330287-32330420,32330566-32331232
          Length = 549

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
 Frame = +1

Query: 169 FMRLKFITRGVRFASSTLKIMEFSDPPASASYCCAESNDGIPPTFAMYEALKDS-----C 333
           +MRLK+    V   +S+  I++F D   S  +    SND    + + ++ +KDS      
Sbjct: 227 WMRLKYPHIAVGALASSAPILQFEDVVPSTIFYDLVSNDFKRESLSCFQTIKDSWKALDA 286

Query: 334 QNNAT--FFKPDDTENGQRLYQGFMTLSDHIETVWPLVDHVRKVAPQYDFDTKSPGNGYR 507
           Q N      K   T +  +  +    LSD + + +  +  V    P  DF    PGN  +
Sbjct: 287 QGNGQDGLLKLSKTFHLCKTIKNTGELSDWLSSAYSYLAMVDYPMPA-DFMMPLPGNPIK 345

Query: 508 SFVSVVDS 531
              + +D+
Sbjct: 346 ELCTKIDN 353


>06_01_0317 + 2281564-2283855
          Length = 763

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 294 WNTIVAFCTAV*STCRRIGKFHYFKRTGSKPDSAS 190
           WNTI+A      S  R +G F   +R G +PD  S
Sbjct: 69  WNTIMAVQARAGSHGRAVGAFLEMRRQGFRPDHTS 103


>06_03_0371 - 19990168-19990584
          Length = 138

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 406 LSDHIETVWPLVDHVRKVAPQYDFDTKSPGNGYRSFVSVVDSC 534
           L++H+ETV  L+ HV +  P+     +      R  V +V SC
Sbjct: 45  LAEHVETVGGLLHHVERDDPRIAAPLEKLEGTLREAVVLVSSC 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,759
Number of Sequences: 37544
Number of extensions: 310935
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)