Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0626
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)                 35   0.043
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)                   29   3.8  
SB_41345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=4)             28   5.0  
SB_53778| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   6.6  
SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)                       27   8.7  
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           27   8.7  

>SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)
          Length = 250

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +1

Query: 319 LKDSCQNNATFF-KPDDTENGQRLYQGFMTLSDHIETVWPLVDHVRKVAPQYDFDTKSPG 495
           LK    +NA +F K       +R ++ F  + D I ++  L  ++ +    +DF  +  G
Sbjct: 31  LKRIVADNAEYFSKYAHKAVYKRFHESFKQILDSIGSMEELSTYLAQRVTLFDFSPEIKG 90

Query: 496 NGYRSFVSVVDSCVLYSLKLSRQVSTGRE 582
           NGYRS + + +  +    ++S    T RE
Sbjct: 91  NGYRSLLRITEHGIRVVTEISYYCLTHRE 119


>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 190 TRGVRFASSTLKIMEFSDPPASASYCCAESNDGIPPTFAMYEALKDSCQNNATFFKPDDT 369
           T  V   +  L I  +SD P      C +SN G+   F  + + K++  +N T      +
Sbjct: 472 TEHVSIFTQALNIPRYSDTPKGDKVFCTDSNVGL-ENFLGWSSAKETEDDNGTDDGAQKS 530

Query: 370 ENG-QRLYQGFMT 405
            NG Q+L    +T
Sbjct: 531 TNGYQKLVDFLLT 543


>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
          Length = 993

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 283 DGIPPTFAMYEALKDSCQNNATFFK 357
           + +PPT   +E+  +SCQ N T FK
Sbjct: 783 NSMPPTNTSFESFVESCQVNMTHFK 807


>SB_41345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=4)
          Length = 366

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 507 SVSVSGRFCIKIILWCYFSYMVHQGPHRF 421
           S + +G   ++I+ WC+FS  VH    R+
Sbjct: 202 SAAGTGIVALRIVAWCWFSLSVHHTVKRY 230


>SB_53778| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 383

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +1

Query: 262 YCCAESNDGIPPTFAMYEALKDSCQNNATFFKPDDTENGQRLYQGFMTLSDHIETVW 432
           +C  ++ND +    +    +K SC  N   F P D +N     + +   +D+++  W
Sbjct: 126 FCLKDTNDSVYVVMSCRVTVKASCAMNLRMF-PKDVQNCNIDIESYGYSADNVQYQW 181


>SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 652

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 211 SSTLKIMEFSDPPASASYCCAESNDG 288
           S T K  EF   P     CCA S+DG
Sbjct: 480 SKTTKAAEFIAKPHVGKICCARSSDG 505


>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 340 NATFFKPDDTENGQRLYQGFMTLSDHIE 423
           N TFF+ DDT + Q   +G +T+S   E
Sbjct: 405 NNTFFQADDTVDAQCTAEGALTISSESE 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,495,585
Number of Sequences: 59808
Number of extensions: 375243
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)