Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0626
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    60   2e-09
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    29   3.3  
Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    27   10.0 

>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
 Frame = +1

Query: 304 AMYEALKDSCQNNATFFKP--DDTENG--QRLYQGFMTLSDHIETVWPLVDHVRKVAPQY 471
           A+ E +   C +NAT F+       NG  +R+      L   IET+   +  +++VAP+Y
Sbjct: 59  AILELIVQMCSDNATHFEKLAQSGANGYNERMPVVQTALQTAIETLKGNIKKLQEVAPKY 118

Query: 472 DFDTKSPGNGYRSFVSVVDSCVLYSLKLSRQV 567
           D+D K+PGNGYRS + + D+ +L+ + L + V
Sbjct: 119 DYDEKTPGNGYRSLICICDTTLLHVVSLQKAV 150


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
            pathway homologprotein 1 protein.
          Length = 1451

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 310  YEALKDSCQNNATFFKPDDTENGQ-----RLYQGFMTLSDHIETVWPLVDHV 450
            Y++  + CQ+N  + K     NG      R  + +  LS  + +VWP+V+ V
Sbjct: 1366 YDSAANMCQHNYVYGKCRTESNGTYCEVGRRTRTYFVLSGSVLSVWPIVEEV 1417


>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
 Frame = +1

Query: 178 LKFITRGVRFASSTLKIMEFSDPPASASYCCAESNDGIPPTF-AMYEALKDSCQNNATFF 354
           L+ +T+ ++    +  + E +D   S  Y    +   +      + E +KD+ +  +T  
Sbjct: 477 LRSLTQQIKLIQDSGSLQEHADGAQSLKYLLQSTFQPLVVHLNCLKEKIKDTYKIASTAR 536

Query: 355 KPD---DTENGQRLYQGFMTLSDHIETVWPLVDHVRKVAPQYDFDTKSPGN 498
                   E+  +L + F   S  +    PL+  +RK+A +Y  D+ S  N
Sbjct: 537 SAKILRKMESDGKLVEKFKEFSSAVSKSLPLLVSLRKIAEEYKKDSSSEMN 587


>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 106 NGNIVKFQHSLIILIFQFYFFGTLLH 29
           N  + K  H  +I+IFQ + FG  +H
Sbjct: 47  NARVSKLFHINVIIIFQVHLFGFFIH 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,867,665
Number of Sequences: 27780
Number of extensions: 292190
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)