Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0626
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23450.2 68415.m02800 protein kinase family protein contains ...    29   1.8  
At2g23450.1 68415.m02799 protein kinase family protein contains ...    29   1.8  
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea...    28   5.4  
At5g67060.1 68418.m08455 basic helix-loop-helix (bHLH) family pr...    27   7.1  
At5g24450.1 68418.m02882 transcription factor-related low simila...    27   7.1  
At3g27740.1 68416.m03463 carbamoyl-phosphate synthase [glutamine...    27   9.4  

>At2g23450.2 68415.m02800 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 231 GIFRSACKCFILLCRKQRWYSTNLRYV*SAKRLLSE 338
           G F  A   F   C+++R  ST LR   SAKRLLSE
Sbjct: 293 GAFLLAALAFFFFCKRRR--STPLRSHLSAKRLLSE 326


>At2g23450.1 68415.m02799 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 231 GIFRSACKCFILLCRKQRWYSTNLRYV*SAKRLLSE 338
           G F  A   F   C+++R  ST LR   SAKRLLSE
Sbjct: 293 GAFLLAALAFFFFCKRRR--STPLRSHLSAKRLLSE 326


>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
           family protein similar to TBP-associated factor
           (GI:1732075) [Homo sapiens] and to 100 kDa subunit of
           Pol II transcription factor (GI:1491718) {Homo sapiens];
           contains Pfam PF00400: WD domain, G-beta repeat (6
           copies)|8689032|gb|AV528749.1|AV528749
          Length = 666

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 494 PGDFVSKSYCGATFRTWSTR 435
           PGDFV  S    T R WST+
Sbjct: 429 PGDFVLSSSADTTIRLWSTK 448


>At5g67060.1 68418.m08455 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 241

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 313 EALKDSCQNNATFFKPDDTENGQRLYQGFMTLSDHIETVWP 435
           E L + C  N++FF PD       L+      SDH  T  P
Sbjct: 14  EKLPEFCNPNSSFFSPDHNNTYPFLFNSTHYQSDHSMTNEP 54


>At5g24450.1 68418.m02882 transcription factor-related low
           similarity to transcription factor IIIC63 [Homo sapiens]
           GI:5281316
          Length = 545

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
 Frame = +1

Query: 211 SSTLKIMEFSDPPASASYCCAESNDGIPPTF---AMYEALKDSCQNNATFFKPDDTENGQ 381
           S   + MEF  PP    YC + + +   P++     ++     CQ     F+ DD    Q
Sbjct: 305 SRVFQRMEFRVPPELKGYCDSNATNKSKPSWDDICAFKVFPFKCQTFLQLFELDDEYIQQ 364

Query: 382 RLYQGFMTLSDHIETVW---PLVDHVR-KVAPQYDFDTKSPG 495
            + +     + + +T W    L+D++R +VA ++      PG
Sbjct: 365 EIRKPPKQTTCNYKTGWFSEALLDNLRLRVAVRFVSVFPEPG 406


>At3g27740.1 68416.m03463 carbamoyl-phosphate synthase
           [glutamine-hydrolyzing] (CARA) / glutamine-dependent
           carbamoyl-phosphate synthase small subunit identical to
           carbamoyl phosphate synthetase small subunit GI:2462781
           [Arabidopsis thaliana]
          Length = 430

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = +1

Query: 295 PTFAMYEALKDSCQNNATFFKPDDTENGQRLYQGFMTLSDHIETV-W----PLVDHV--R 453
           P++A    L  + Q   T   PDD E+GQ    G +  +  I T  W     L D++  R
Sbjct: 99  PSYAGQFVLMTNPQIGNTGVNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTER 158

Query: 454 KVAPQYDFDTKS 489
            +   YD DT++
Sbjct: 159 DIMGVYDLDTRA 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,817,016
Number of Sequences: 28952
Number of extensions: 265363
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)