Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0624
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    42   4e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    29   0.32 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    28   0.97 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.0  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   3.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   5.2  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   6.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.8  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   9.0  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 25/89 (28%), Positives = 45/89 (50%)
 Frame = +1

Query: 238 NFLVVVVSGRGRDYYHKLKQIAELKVGILTQCIKEDTATRRMNPQTARNILLKVNSKLMG 417
           ++L  ++     + Y  +K++    +G+ +QC       +   PQ   N+ +K+N K+ G
Sbjct: 499 DYLFFILDKNSPEPYGSIKRVCNTMLGVPSQCAISKHILQS-KPQYCANLGMKINVKVGG 557

Query: 418 INQALENRSIPQCLKGGAVMIVGADVTHP 504
           IN +L  +S P  L     +I+G DV HP
Sbjct: 558 INCSLIPKSNP--LGNVPTLILGGDVYHP 584


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 342 RYRHAPNEPTNSSEHFTKGEFEAYGNKSGIGESFHSSVLKG 464
           R R + N  T SS+H+   EFE+    + + E+ H+ +L G
Sbjct: 133 RLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYG 173


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 360 NEPTNSSEHFTKGEFEAYGNKSGIGESFHSSVLKGWGC 473
           +E  + +E+ +  +FE  GN+S     F +S+   W C
Sbjct: 23  SEAADVNEYSSTSKFETLGNQSSTNLGFSNSLQDKWDC 60


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 288 AETDCRTQSGYT--DAVYQRRYRHAPNEPTNSSEHFTKGEF 404
           A  + R  + YT   +  +  YR  PNEP NS+ + T   F
Sbjct: 80  ASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAYTTYSSF 120


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 178 SKPSLVGSRSCPFVDRYSLASTRCLHNTSTWI 83
           S+  L G  +C F +R S+AS+R + +   W+
Sbjct: 300 SRLDLQGDCTCIFKNRSSIASSRTMDDVVRWL 331


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 29   CLLKPEALNSWGFIAIELDPRGCIMKTSC 115
            CLL  E    WGF    L   GCIM   C
Sbjct: 1173 CLLGAE---EWGFATTPLIALGCIMMRKC 1198


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -2

Query: 384 VPSCLWVHSARGGIFFDTLRQYTHFEFGNLFQLVIIIAAPSRNDHDQEIDLFF 226
           +P  +W+++  GG+    L  +TH     +  L+ +  A + + H   ID  +
Sbjct: 172 LPLGVWLYTVSGGLKSTFLSDWTHTVIVYIVILITLFVAYTSSVHIGSIDKMY 224


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
 Frame = +1

Query: 184  IRINDLHKSMLHALEKQVNFLVVVVSGRGRDYYHKLKQIAELK--------VGILTQCIK 339
            IRI+  H +      KQ    + +    G+DY + LK   +L+         G+    + 
Sbjct: 1950 IRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLKGHEDLRQDERVMQLFGLCNTLLT 2009

Query: 340  EDTAT--RRMNPQTARNILLKVNSKLMG 417
             D+ T  RR+N +    I L  NS L+G
Sbjct: 2010 TDSETFKRRLNIERYTVIPLSPNSGLLG 2037


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 430 LENRSIPQCLKGGAVMIVG--ADVT 498
           LEN +I   LKGG VM+    AD+T
Sbjct: 537 LENSTIENALKGGYVMLENKEADIT 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,436
Number of Sequences: 5004
Number of extensions: 53366
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)