Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0624
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.7  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   7.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 265 VQKRPRPGN*PVFLERAAYSCAGH 194
           V K P P + P+F  R  +SC G+
Sbjct: 50  VSKVPGPFSLPIFGTRWIFSCIGY 73


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 255 RFWTGPRLLSQAETDCRTQS 314
           +FWT PRL  +  T   T S
Sbjct: 65  QFWTDPRLAFKKRTGVETLS 84


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 255 RFWTGPRLLSQAETDCRTQS 314
           +FWT PRL  +  T   T S
Sbjct: 65  QFWTDPRLAFKKRTGVETLS 84


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 255 RFWTGPRLLSQAETDCRTQS 314
           +FWT PRL  +  T   T S
Sbjct: 4   QFWTDPRLAFKKRTGVETLS 23


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 213 HTLVQVIYTDVEASHLWLGHVHAHLSTGIH 124
           + L+  +Y+     H  +GH H+H+    H
Sbjct: 402 NNLLNNVYSTPGPHHHTMGHGHSHIHATPH 431


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 130 YSLASTRCLHNTSTWIQFYGNE 65
           YS  +    +NT+ W +F  NE
Sbjct: 114 YSAKTFDVFYNTAVWARFNVNE 135


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 130 YSLASTRCLHNTSTWIQFYGNE 65
           YS  +    +NT+ W +F  NE
Sbjct: 114 YSAKTFDVFYNTAVWARFNVNE 135


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 78 NWIHVDV 98
          NWIHVD+
Sbjct: 67 NWIHVDI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,977
Number of Sequences: 438
Number of extensions: 3960
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)