Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0623
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    37   1e-04
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   5.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 36.7 bits (81), Expect = 1e-04
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +1

Query: 244 VVKEIKDKGGVAV---ADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQ 414
           +V+E+K K G  V    D ++  +  K+I+    N G IDILINNA I  D +       
Sbjct: 47  LVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVL 106

Query: 415 DWDLIQAVHLKG 450
           DW  I  ++L G
Sbjct: 107 DWKKIFDINLLG 118


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 29  SIVNYKLIISFLYSRRGWINCVST 100
           S+ NYK +IS      G INC S+
Sbjct: 47  SLRNYKTLISSHDELPGHINCDSS 70


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 239 SAALDFPAPSLALPRSLTTT 180
           S  L  PA S +LP ++TTT
Sbjct: 91  SRPLHPPASSTSLPATITTT 110


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 458 LKAPFKWTAWIKSQSCSVI 402
           L AP+    W K+++CS I
Sbjct: 101 LLAPYPDWTWAKNENCSGI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,934
Number of Sequences: 438
Number of extensions: 2486
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)