Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0620
(403 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.051
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 31 0.067
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 0.82
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 0.82
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 0.82
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 0.82
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 0.82
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 0.82
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 0.82
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 0.82
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 0.82
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 0.82
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 0.82
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 0.82
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 1.4
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 26 2.5
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 3.3
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 25 4.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 5.8
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 25 5.8
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 5.8
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 25 5.8
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 5.8
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 24 7.7
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.5 bits (68), Expect = 0.051
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +2
Query: 38 EKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRKRWXRSPVDSYTKX 217
E+ I+L + Y L D+++ ++ E W+E Q+ VEE + + + +K
Sbjct: 500 EQSIELTRLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQE-LQDTKEVLSKS 558
Query: 218 SKRLX*YAXVTPXL 259
SK Y V L
Sbjct: 559 SKESDDYEEVVGKL 572
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 31.1 bits (67), Expect = 0.067
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 98 RKNILARETTWQEIAKQISRPVEECRKRW 184
RKN++ W +I ++++R +CR RW
Sbjct: 325 RKNVVEHGKCWTKIGRKMARMPNDCRDRW 353
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 346 LITFFCLXMSSGAINPRCHPRKFSFXVDN*XWC 248
+I F CL + G + C FSF + WC
Sbjct: 650 IILFLCLWVQGGRVRAYCIIPNFSFAIAFKIWC 682
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 NILARETTWQEIAKQISRPVEEC 172
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 8 IRHEGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQIS 154
I HEG EKLIDL K + K+ + + + + Q + K+++
Sbjct: 163 IDHEGLLPAHEKLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVN 211
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 2.5
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 209 YNYPPETSSISSCILQLVWISVSLFLAMLFPLLVYSSWRGLLRRTNE 69
YNY P S S+ IL + W+ + +FL L S + LLR NE
Sbjct: 18 YNYIPHPSIFSNAILGIAWLFL-IFLCCSC-LTKSSIFARLLRVKNE 62
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 8 IRHEGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRK 178
I+ EDEK ++ LY+ + KN T+Q Q+S+ ++ K
Sbjct: 155 IQRSQWVREDEKKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQLDSLEK 211
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 25.0 bits (52), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 315 EDMXRQKKVIXINEQKPKTEQEVITD 392
E+ +KKVI N +K + E+ ++TD
Sbjct: 58 ENARMRKKVIEENRKKEEIEERILTD 83
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 24.6 bits (51), Expect = 5.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 17 EGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIA 142
E EE E +ID V + D +D K+ WQE++
Sbjct: 199 EQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYLIKWQEVS 240
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 5.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 86 KDPSRKNILARETTWQEIAKQISRPVEECRKRW 184
++ S L + T QE+A++ +R EC + W
Sbjct: 144 REKSNLEKLVADHTIQELARENARLKSECERAW 176
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 24.6 bits (51), Expect = 5.8
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 104 NILARETTWQEIAKQISR 157
N++A +TTW ++ K+ +R
Sbjct: 293 NVIALQTTWNQMVKEYNR 310
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 5.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 29 EEDEKLIDLVKPYAHLYDVKDPSRKNILARETT 127
EE E ++ + +YD KDP+R IL +E+T
Sbjct: 346 EEMEDCVNFFRSCNAVYDSKDPNR--ILMKEST 376
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 5.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 206 NYPPETSSISSCILQ-LVWISVSLFLAMLFPL 114
N+ SS S I+ L+WI V+ +LFPL
Sbjct: 581 NHDLSKSSFSGLIIVCLIWILVAAIYIILFPL 612
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 24.2 bits (50), Expect = 7.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 71 HLYDVKDPSRKNILARE 121
HLY ++D +KN+ RE
Sbjct: 2 HLYQLEDELKKNVFCRE 18
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,880
Number of Sequences: 5004
Number of extensions: 25742
Number of successful extensions: 101
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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