Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0620
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0115 - 16154943-16155335,16155422-16155602,16156188-16156258 29 1.8
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 28 3.2
04_04_1667 + 35211776-35212132,35212640-35212727,35213573-352137... 27 4.2
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790... 27 5.6
04_04_1123 + 31068959-31069184,31069795-31069951,31072099-310723... 27 5.6
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 27 5.6
09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273 27 7.3
08_01_0024 + 180749-180872,181826-181880,181936-182025,182075-18... 27 7.3
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 7.3
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 27 7.3
06_02_0172 + 12594542-12596083 26 9.7
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009 26 9.7
02_05_0452 + 29127686-29128078,29128155-29128242,29129287-291294... 26 9.7
>01_04_0115 - 16154943-16155335,16155422-16155602,16156188-16156258
Length = 214
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 23 TTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRKRWXRSPVD 202
+TEED +L+ A L + DP N + W ++A + R R + D
Sbjct: 77 STEEDLRLVS-----AWLNNSNDPIESNFKKNDKYWADVAAAYNSTTPSSRFRQVKQVKD 131
Query: 203 SYTKXSKRL 229
++K K++
Sbjct: 132 RFSKIKKKV 140
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 134 EIAKQISRPVEECRKR 181
EI+KQ P+EECRK+
Sbjct: 401 EISKQTKAPIEECRKK 416
>04_04_1667 +
35211776-35212132,35212640-35212727,35213573-35213705,
35213806-35214616
Length = 462
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 92 PSRKNILARE---TTWQEIAKQISRPVEECRK 178
PSRK+++A TTW+++ K I R E C K
Sbjct: 79 PSRKDVVACASVCTTWRDMCKDIVRNPEFCGK 110
>07_01_0935 +
7905748-7905765,7906071-7906096,7906142-7906166,
7906891-7907700,7907803-7907934,7908102-7908470,
7908540-7908671,7909135-7909662
Length = 679
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 200 PPETSSISSCILQLVWISVS-LFLAMLFPLLVYSSW 96
PP TS+ S + W S S L L PL V+SS+
Sbjct: 429 PPTTSTFSGRVTATAWSSTSDLALLRQIPLSVWSSY 464
>04_04_1123 +
31068959-31069184,31069795-31069951,31072099-31072319,
31072405-31072525,31072616-31072713,31072904-31073025,
31073199-31073311,31073470-31073565,31073655-31073870,
31073972-31074113,31074208-31074453,31074732-31075040
Length = 688
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 131 QEIAKQISRPVEECRK 178
+E KQI RP+E+CR+
Sbjct: 611 EEAVKQIQRPIEKCRR 626
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 155 RPVEECRKRWXRSPVDSYTKXSKRL 229
R +E+C K W PVD Y+K S L
Sbjct: 184 RWLEDCLKCWKILPVDDYSKSSWEL 208
>09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273
Length = 404
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 23 TTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRKR 181
T +ED +L+ A L + DP N +T W+++A + E+ RKR
Sbjct: 135 TRDEDLRLVS-----AWLENSTDPIEGNARKGDTYWRQVADTYNATTEDDRKR 182
>08_01_0024 +
180749-180872,181826-181880,181936-182025,182075-182426,
182913-183000,183162-183294,183394-184089,184305-184368,
184489-184578
Length = 563
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 92 PSRKNILARET---TWQEIAKQISRPVEECRK 178
PSRK+++A TW+EI K I + E C K
Sbjct: 167 PSRKDVVACAAVCRTWREICKDIVQSPEICGK 198
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 242 WHTTRDVYFXWYNYPPETSSISSCILQLVWISVS--LFLAML 123
W +T DV F PP TS++S + W S S FL +L
Sbjct: 224 WSSTSDVAFL--PLPPTTSTLSGRVTTTAWSSTSDVAFLPLL 263
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 134 EIAKQISRPVEECRKR 181
EI++Q P+EECRK+
Sbjct: 323 EISRQTKAPIEECRKK 338
>06_02_0172 + 12594542-12596083
Length = 513
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 161 LVWISVSLFLAMLFPLLVYSSWRGLLRRTNERMV 60
+ W S+ L ++LFPLLV R + R+ +++
Sbjct: 1 MAWYSLVLMTSLLFPLLVLLVMRCYVTRSGAKLL 34
>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
Length = 768
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 5 GIRHEGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARE 121
G RH + + + D V P HL ++ PSR+ L E
Sbjct: 431 GRRHHAGATDVDNVTDPVHPEPHLAEISLPSRQQELHTE 469
>02_05_0452 +
29127686-29128078,29128155-29128242,29129287-29129419,
29129506-29130178
Length = 428
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 38 EKLIDLVKPYAHLYDVKDPSRKNILARET---TWQEIAKQISRPVEEC 172
E L+D+++ + P+R+ ++A +W+E+ K++ + +EEC
Sbjct: 74 ELLLDVIQR-VEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEEC 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,274,638
Number of Sequences: 37544
Number of extensions: 163203
Number of successful extensions: 498
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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