Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0620
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical ...    36   0.011
Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    34   0.044
AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical ...    31   0.31 
Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z81555-6|CAJ85762.1|  709|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81555-5|CAB04517.2|  694|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AY204175-1|AAO39179.1|  238|Caenorhabditis elegans nuclear recep...    27   6.7  
AL021470-2|CAE17952.1|  398|Caenorhabditis elegans Hypothetical ...    27   6.7  
AL021470-1|CAA16292.1|  401|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z50863-5|CAA90738.2|  746|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z50863-4|CAL36493.1|  412|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z49153-2|CAA89023.2|  746|Caenorhabditis elegans Hypothetical pr...    26   8.8  
U64862-1|AAM69079.2|  593|Caenorhabditis elegans Hypothetical pr...    26   8.8  
AF040653-5|AAB95026.1|  491|Caenorhabditis elegans F-box b prote...    26   8.8  

>AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical
           protein ZC416.1 protein.
          Length = 139

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +2

Query: 41  KLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRKRWXRSPVDSYTKXS 220
           +LI  VK    LYD  D     +  R + W EIA+ +    E  + RW ++  D Y K  
Sbjct: 52  RLIAEVKARPFLYDQSDEGYNLLSWRNSAWNEIAENLETTSEHVKTRW-KTLRDRYKKEE 110

Query: 221 KR 226
           K+
Sbjct: 111 KK 112


>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +2

Query: 41  KLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQI--SRPVEECRKRWXRSPVDSYTK 214
           +LI+ V+ Y  LY+       + + R+  W+ IAK I  +   E  +KRW +   D Y K
Sbjct: 10  RLINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNIDPNCAAEFAKKRWLQLR-DRYRK 68

Query: 215 XSKRLX*YAXVTPXLVVYXKTEFPWMTSWV-DSTGR 319
             K       VTP    Y   +  W+  ++ D+ G+
Sbjct: 69  ELKIAIKNGFVTPVRWCYF-NQLSWLDPFLKDNIGQ 103


>AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical
           protein H20J04.3 protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 38  EKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRP--VEECRKRWXRSPVDSYT 211
           + LI  V+ +  LYDV+DP  ++   R   W  I  ++  P  V    K+W +   D Y 
Sbjct: 121 KNLILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYPGTVPSIYKQWKKHR-DRYV 179

Query: 212 KXSKRL 229
           +  +RL
Sbjct: 180 REKRRL 185


>Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical
           protein C09H10.7 protein.
          Length = 325

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 32  EDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRK 178
           ++  L+D  + Y  +YD K+ + +  +ARET  QE+   I R VE  R+
Sbjct: 194 DEAGLVDAQQNYVVVYDQKEKTHRIYMARETQEQEVHAAI-RYVEALRR 241


>Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 392 ICYNLLFCFWFL--FINXDYFLLPXHVF-RCYQPKMSSKEIQFXCR 264
           I ++L FCFW    F++   FL   HVF   Y P M+S  +    R
Sbjct: 236 IIFDLFFCFWICMSFLSSVPFLSLSHVFLTAYWPLMTSLTLDVHIR 281


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -3

Query: 359  LFINXDYFLLPXHVFRCYQPKMSSK----EIQFXCRQ 261
            LF +  +FL+   + RCY  + ++K     ++F CRQ
Sbjct: 2274 LFASQGFFLIMPTLLRCYSQRQTNKVFCGVVEFICRQ 2310


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -3

Query: 359  LFINXDYFLLPXHVFRCYQPKMSSK----EIQFXCRQ 261
            LF +  +FL+   + RCY  + ++K     ++F CRQ
Sbjct: 2283 LFASQGFFLIMPTLLRCYSQRQTNKVFCGVVEFICRQ 2319


>U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical
           protein C06A6.2a protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 44  LIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQI 151
           LID+++    L+    P + N+ A+E  +++  KQ+
Sbjct: 250 LIDMIQDKPELWQSNHPQKDNLQAQEQLFEDFGKQL 285


>U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A6.2b protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 44  LIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQI 151
           LID+++    L+    P + N+ A+E  +++  KQ+
Sbjct: 250 LIDMIQDKPELWQSNHPQKDNLQAQEQLFEDFGKQL 285


>Z81555-6|CAJ85762.1|  709|Caenorhabditis elegans Hypothetical
           protein F58E10.1b protein.
          Length = 709

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 110 LARETTWQEIAKQISRPVEEC--RKRWXRSPVDSYTKXSKRL 229
           L R+ TW  I K+    V+EC    +W      S  K  K+L
Sbjct: 538 LLRDATWSIIEKRFDNAVQECDFMNKWPGYSPSSMRKDLKKL 579


>Z81555-5|CAB04517.2|  694|Caenorhabditis elegans Hypothetical
           protein F58E10.1a protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 110 LARETTWQEIAKQISRPVEEC--RKRWXRSPVDSYTKXSKRL 229
           L R+ TW  I K+    V+EC    +W      S  K  K+L
Sbjct: 523 LLRDATWSIIEKRFDNAVQECDFMNKWPGYSPSSMRKDLKKL 564


>AY204175-1|AAO39179.1|  238|Caenorhabditis elegans nuclear receptor
           NHR-65 protein.
          Length = 238

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 314 RCYQPKMSSKEIQFXCRQLI 255
           RCY+  MSS+  QF CR LI
Sbjct: 66  RCYEAGMSSENFQF-CRDLI 84


>AL021470-2|CAE17952.1|  398|Caenorhabditis elegans Hypothetical
           protein Y17D7A.3b protein.
          Length = 398

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 314 RCYQPKMSSKEIQFXCRQLI 255
           RCY+  MSS+  QF CR LI
Sbjct: 66  RCYEAGMSSENFQF-CRDLI 84


>AL021470-1|CAA16292.1|  401|Caenorhabditis elegans Hypothetical
           protein Y17D7A.3a protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 314 RCYQPKMSSKEIQFXCRQLI 255
           RCY+  MSS+  QF CR LI
Sbjct: 66  RCYEAGMSSENFQF-CRDLI 84


>Z50863-5|CAA90738.2|  746|Caenorhabditis elegans Hypothetical
           protein C14H10.2a protein.
          Length = 746

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 14  HEGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEE 169
           HE   E D+K  +L K YA   D + P  K  L R   ++E   ++   +E+
Sbjct: 544 HEDKKEADQKFKNLEKEYAAYRDEQRPEIKTELERR--YEEAKYRLKNALEK 593


>Z50863-4|CAL36493.1|  412|Caenorhabditis elegans Hypothetical
           protein C14H10.2b protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 14  HEGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEE 169
           HE   E D+K  +L K YA   D + P  K  L R   ++E   ++   +E+
Sbjct: 210 HEDKKEADQKFKNLEKEYAAYRDEQRPEIKTELERR--YEEAKYRLKNALEK 259


>Z49153-2|CAA89023.2|  746|Caenorhabditis elegans Hypothetical
           protein C14H10.2a protein.
          Length = 746

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 14  HEGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEE 169
           HE   E D+K  +L K YA   D + P  K  L R   ++E   ++   +E+
Sbjct: 544 HEDKKEADQKFKNLEKEYAAYRDEQRPEIKTELERR--YEEAKYRLKNALEK 593


>U64862-1|AAM69079.2|  593|Caenorhabditis elegans Hypothetical
           protein ZC8.6 protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 160 WSGYLFRYFLPCCF 119
           W  ++ R FLPCCF
Sbjct: 166 WLKWIHRVFLPCCF 179


>AF040653-5|AAB95026.1|  491|Caenorhabditis elegans F-box b protein
           protein 52 protein.
          Length = 491

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 41  KLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRK 178
           +L D    + HL D+  PS+ N L  E    E  +   + +++C K
Sbjct: 97  RLFDTRSWFNHLMDILQPSKLNTLNVENPSDEFDESKFKMIKKCLK 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,937,401
Number of Sequences: 27780
Number of extensions: 145681
Number of successful extensions: 527
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)