Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0620
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.18 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.56 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.56 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   4.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.9  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   9.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          20   9.2  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 44  LIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEE 169
           L DLV+    L+D K+     I  +    Q   + I  PVEE
Sbjct: 132 LCDLVQGLERLFDEKNAGNNKITMKSKKEQNAEEDIVDPVEE 173


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 388 VITSCSVFGFCSLXLITFFCLXMS 317
           ++ S +V GFC L L+ F C+ +S
Sbjct: 444 LLDSYAVSGFCLLFLMFFECIAIS 467


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 388 VITSCSVFGFCSLXLITFFCLXMS 317
           ++ S +V GFC L L+ F C+ +S
Sbjct: 497 LLDSYAVSGFCLLFLMFFECIAIS 520


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 160 WSGYLFRYFLPCC 122
           +S YL + ++PCC
Sbjct: 241 FSYYLIQIYIPCC 253


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 160 WSGYLFRYFLPCC 122
           +S YL + ++PCC
Sbjct: 241 FSYYLIQIYIPCC 253


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 239 HTTRDVYFXW 210
           HTT+D+ F W
Sbjct: 155 HTTQDLVFIW 164


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 73  FVRRKRPLQEEYTSKGN 123
           F++ +  LQEE  S+GN
Sbjct: 51  FIKMQELLQEEDISEGN 67


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 218 FXWYNYPPETSSISSCI 168
           F W +Y PE  ++S  +
Sbjct: 35  FGWGSYGPEAGNVSCSV 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,813
Number of Sequences: 438
Number of extensions: 1753
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)