Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0620
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein...    30   0.66 
At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5...    28   2.7  
At2g34640.1 68415.m04255 expressed protein                             28   2.7  
At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3...    27   4.7  
At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains...    27   6.2  
At5g13390.1 68418.m01542 expressed protein                             26   8.2  
At4g08700.1 68417.m01438 purine permease family protein similar ...    26   8.2  
At3g59000.1 68416.m06576 F-box family protein contains F-box dom...    26   8.2  
At3g43570.1 68416.m04631 GDSL-motif lipase, putative similar to ...    26   8.2  
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    26   8.2  

>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
           protein-related similar to ATP-dependent Clp protease,
           ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
           putida KT2440]; similar to  ClpB protein
           (SP:Q9RA63){Thermus thermophilus}
          Length = 422

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 23  TTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQ-EIAKQISRPVEECR 175
           TT E   L+ L     H Y     S + IL+R+  WQ E    IS+ +  C+
Sbjct: 39  TTREKPMLVTLNSSLEHTYQKDFKSLREILSRKVAWQTEAVNAISQIICGCK 90


>At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain; identical to cDNA putative c-myb-like
           transcription factor MYB3R-5 (MYB3R5)  GI:15375300
          Length = 548

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 23  TTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQI-SRPVEECRKRW 184
           T EED+K+++LVK Y        P++         W  IAK +  R  ++CR+RW
Sbjct: 131 TQEEDDKIVELVKKYG-------PAK---------WSVIAKSLPGRIGKQCRERW 169


>At2g34640.1 68415.m04255 expressed protein 
          Length = 527

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +2

Query: 11  RHEGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRKRWXR 190
           ++E   EE+E   +L K     +   DP++K  + +  T  E      +P +E   RW R
Sbjct: 189 KNEFEREEEETGFELDKKLGRPHPFIDPTKKKQIEKTLTSDESWWNWRKPEKEQWSRWQR 248

Query: 191 SPVDSYTKXSKRL 229
              D  T   K +
Sbjct: 249 RRPDVETVFLKAM 261


>At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3)
           contains Pfam profile: Myb DNA-binding proteins;
           identical to cDNA putative c-myb-like transcription
           factor (MYB3R3) GI:15375285
          Length = 505

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +2

Query: 8   IRHEGTTEEDEKLIDLVKPYAHLYDVKDPSRKNILARETTWQEIAKQISRPVEECRKRW 184
           I+   T EEDEK+++LV+ Y        P++ +I+A     Q +  +I +   +CR+RW
Sbjct: 129 IKGPWTHEEDEKIVELVEKYG-------PAKWSIIA-----QSLPGRIGK---QCRERW 172


>At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains
           Pfam profiles: PF02309 AUX/IAA family and PF02362: B3
           DNA binding domain
          Length = 638

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 294 HLGLIAPEDMXRQKKVIXINEQKPKTEQEVITDNQ 398
           HLG++A      Q K + I   KP+T Q +I+ N+
Sbjct: 235 HLGVLATARHATQTKTMFIVYYKPRTSQFIISLNK 269


>At5g13390.1 68418.m01542 expressed protein 
          Length = 1123

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 161 LVWISVSLFLAMLFPLLVY 105
           +VW+S +L LA+  PLL+Y
Sbjct: 579 IVWVSAALLLAVSPPLLLY 597


>At4g08700.1 68417.m01438 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 361

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 200 PPETSSISSCILQ-LVWISVSLFLAMLFPLLVYS 102
           P   SS SSC  + LVWI +SL  A+    L+YS
Sbjct: 89  PASHSSSSSCSFKTLVWIYLSLGFAIGLDNLLYS 122


>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 491

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 173 CILQLVWISVSLFLAMLFPLLVYSSW 96
           C + + W++ S+FL ML  L++ S W
Sbjct: 148 CGIDISWVAGSIFLPMLKTLVLDSVW 173


>At3g43570.1 68416.m04631 GDSL-motif lipase, putative similar to
           family II lipases EXL3 GI:15054386, EXL1 GI:15054382,
           EXL2 GI:15054384 from [Arabidopsis thaliana]; contains
           Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase
          Length = 320

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 292 HPRKFSFXVDN*XWCNXGILXETFTXLGITIHRRPXPSLPAFFNWSGY 149
           HP+K+ F V +   C  G+L  T + L  ++++    +  A+  W  Y
Sbjct: 252 HPKKYGFEVADRGCCGKGLL--TISYLCNSLNQFTCSNSSAYIFWDSY 297


>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 300 GLIAPEDMXRQKKVIXINEQKPKTEQEVITDNQE 401
           GL+A +   R KKV+  +E+K K E+  I   Q+
Sbjct: 871 GLLAADASERVKKVLESSEEKQKLEKMKIAYGQQ 904


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,537,225
Number of Sequences: 28952
Number of extensions: 134232
Number of successful extensions: 453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)