Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0619
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   0.53 
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    24   4.9  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    24   4.9  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    24   4.9  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    23   8.6  
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    23   8.6  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    23   8.6  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    23   8.6  

>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWARGTHVAAA 219
           DV  +  S++G  A  +SD G+V VW    H +AA
Sbjct: 439 DVTAVDWSSEGQLA-SISDDGSVRVWNSSLHGSAA 472


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = -1

Query: 185 LTDDNSAVVICEDGTFHKFTFAAEGNCHRSDF 90
           + +DN     C+ G++ +       NC R  F
Sbjct: 223 MEEDNEKYCFCQQGSYGQMVACDNANCEREWF 254


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 257 VHVW-ARGTHVAAARAPPDTRALCALTDDNSAVVICEDG 144
           V VW   G       AP D     AL+DD+   V C++G
Sbjct: 323 VKVWDMEGNLCGIFNAPTDYIHKLALSDDDLLAVACKNG 361


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 113 GNCHRSDFEYFLQVGDDDEFL 51
           G+ H SD +YFL+   +DEF+
Sbjct: 242 GHPHPSDIDYFLKSIMNDEFV 262


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 154 AKTAPSTSSRLLRKETVIGPTLNISCRLETTTNSYNDDCCTIK 26
           A T+P+TSS L+ +     P  + S R+    NS+N    +IK
Sbjct: 259 APTSPNTSSTLITQSAAPTPIASTSIRI----NSFNPRNGSIK 297


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 9   SSNKVNFIVQQSSL*EFVVVSNLQEIFKVGPMTV 110
           SS K +++V Q+ + E +V SNL + +    MT+
Sbjct: 31  SSYKSSYLVNQNLMDEALVKSNLLKEYNSEKMTI 64


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 131 FTFAAEGNCHRSDFEYFLQVGD 66
           F F  E NC  +D   F   GD
Sbjct: 690 FNFGGEANCENTDTTLFTTWGD 711


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -1

Query: 311 ISLSAQGGRAVCVSDKGTVHVWARGTHVAAARAPP 207
           I++ + G   +  ++KG  +VW    H  A+   P
Sbjct: 173 ITVGSDGSMLIAGNNKGNCYVWRMLNHQGASLLQP 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 946,667
Number of Sequences: 5004
Number of extensions: 14085
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)