Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0619
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350... 33 0.068
09_06_0184 - 21413275-21414267 28 1.9
08_02_0755 - 20814074-20814268,20814909-20814965,20815047-208151... 28 1.9
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235... 28 1.9
05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615 27 2.6
06_01_1163 - 9881721-9883169 27 3.4
03_06_0195 + 32256771-32258792 27 3.4
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 26 5.9
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 26 5.9
07_03_1637 + 28293033-28293779,28294652-28295233,28295650-282958... 26 7.8
02_04_0487 + 23353587-23354603 26 7.8
02_04_0484 + 23307119-23308135 26 7.8
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 26 7.8
>01_01_0476 +
3505799-3506479,3506639-3506897,3508427-3508550,
3508922-3509030
Length = 390
Score = 32.7 bits (71), Expect = 0.068
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWARGTHVAAARAPPDTRAL 192
D+Y I+LS SDKGTVH+++ VA A + R+L
Sbjct: 236 DIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDASNEQRSL 279
>09_06_0184 - 21413275-21414267
Length = 330
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 272 SDKGTVHVWARGTHVAAARAPPDTRALCALT 180
SD+ + H+ G+H+ A +AP + + C+ T
Sbjct: 44 SDRWSPHIGTPGSHIGAVQAPASSLSSCSET 74
>08_02_0755 -
20814074-20814268,20814909-20814965,20815047-20815157,
20815291-20815344,20815731-20815943,20816655-20816773,
20816880-20816940,20817037-20817147,20817239-20817383,
20817477-20817523
Length = 370
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWARGTH 231
D+ + ++A G + ++ +G V+ W RG H
Sbjct: 229 DLSLVDIAAGGWHSTALTKEGEVYAWGRGEH 259
>01_06_0910 -
32922459-32922646,32922725-32922823,32923371-32923502,
32923585-32923743,32924553-32924711,32924897-32925052,
32925846-32926044
Length = 363
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 311 ISLSAQGG-RAVCVSDKGTVHVWARGTH 231
+S A GG A+ ++ G V W RGTH
Sbjct: 52 VSFVAGGGAHAIALTSDGEVFTWGRGTH 79
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 311 ISLSAQGGRAVCVSDKGTVHVWARGTH 231
+ ++A + V+DKGTV W G H
Sbjct: 288 VHIAAGTEHSASVTDKGTVFTWGWGEH 314
>05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615
Length = 458
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -1
Query: 275 VSDKGTVHVWARGTHVAAARAPPDTRALCALTDDNSAVVICEDGTFHKFTF 123
++D + W G+H+A PPD + + + V ED +HK F
Sbjct: 209 ITDSRQITFWRMGSHMAIPSIPPDHQ--FDVVSNQFVVEEMEDVIYHKGAF 257
>06_01_1163 - 9881721-9883169
Length = 482
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 284 AVCVSDKGTVHVWARGTHVAAA 219
A + GT VWA G+H AAA
Sbjct: 309 AAALERTGTAFVWAAGSHAAAA 330
>03_06_0195 + 32256771-32258792
Length = 673
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWARGTHVAAARAPPDTRAL 192
DV +S A G RA+ + V V ++ AAA PDT AL
Sbjct: 603 DVEALSQGATGLRAMAAAPSFAVGVDVSASNTAAAAFLPDTLAL 646
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 245 ARGTHVAAARAPPDTRALCALTDDNSAVVICEDGTFHKFTFAAEG 111
A G+HVAAA + CAL ++V+ G F AA G
Sbjct: 133 ATGSHVAAAITAAIASSTCALVTATTSVITSTTGAL--FATAASG 175
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWA 243
++Y I+LS SDKGTVHV++
Sbjct: 432 EIYSIALSPNVQWLAVSSDKGTVHVFS 458
>07_03_1637 +
28293033-28293779,28294652-28295233,28295650-28295863,
28295894-28295911,28295983-28296118,28296203-28296281
Length = 591
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVW 246
D+Y I S SDKGTVHV+
Sbjct: 452 DIYSIVFSPDSEWLAVSSDKGTVHVF 477
>02_04_0487 + 23353587-23354603
Length = 338
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 314 CISLSAQGGRAVCVSD--KGTVHVWARGTHVAAARAP 210
CI S G+A+CV D +GT V G H+ ++P
Sbjct: 295 CIYYSGFNGKALCVYDMERGTTAVINPGEHLPYHQSP 331
>02_04_0484 + 23307119-23308135
Length = 338
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 314 CISLSAQGGRAVCVSD--KGTVHVWARGTHVAAARAP 210
CI S G+A+CV D +GT V G H+ ++P
Sbjct: 295 CIYYSGFNGKALCVYDMERGTTAVINPGEHLPYHQSP 331
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -1
Query: 299 AQGGRAVCVSDKGTVHVWARGTHVAAARAPPDTRALCALTDDNSAVVICEDGTFHKFTFA 120
A GG D + A G A APP A+ DD + V+ + T TFA
Sbjct: 86 ATGGALRLTYDGRLLWTGANGQDRTVA-APPQPAVAAAMRDDGNFVLYAANATVAWSTFA 144
Query: 119 A 117
A
Sbjct: 145 A 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,443,472
Number of Sequences: 37544
Number of extensions: 107019
Number of successful extensions: 342
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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