Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0619
(323 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26158| Best HMM Match : WD40 (HMM E-Value=1.1) 67 3e-12
SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 4e-07
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 30 0.38
SB_18907| Best HMM Match : RCC1 (HMM E-Value=0) 29 0.66
SB_7970| Best HMM Match : RCC1 (HMM E-Value=0) 29 0.66
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.5
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42) 27 3.5
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 26 8.1
SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
>SB_26158| Best HMM Match : WD40 (HMM E-Value=1.1)
Length = 416
Score = 67.3 bits (157), Expect = 3e-12
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 23/112 (20%)
Frame = -1
Query: 320 VYCISLSAQGGRAVCVSDKGTVHVWAR-----------------GTHV------AAARAP 210
+YCI+ S SDKGTVH++A G +V A P
Sbjct: 305 LYCINFSHDSAFLCVSSDKGTVHIFALKNTKLNKRSSLAKVGFLGQYVESQWGLANFTVP 364
Query: 209 PDTRALCALTDDNSAVVICEDGTFHKFTFAAEGNCHRSDFEYFLQVGDDDEF 54
+ +CA +S + +C DGTFHK+ F +GNC+R ++ FL++GDD EF
Sbjct: 365 AEVACVCAFGQGSSVIAVCLDGTFHKYVFTPDGNCNRESYDVFLELGDDCEF 416
>SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 50.0 bits (114), Expect = 4e-07
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 218 RAPPDTRALCAL-TDDNSAVVICEDGTFHKFTFAAEGNCHRSDFEYFLQVGDDD 60
+ P D +CA + N+ + IC DG+++KF F +G C R + FLQ+ D D
Sbjct: 198 QVPGDPHCICAFGAEKNTVIAICADGSYYKFAFNPKGECSRDAYAQFLQMTDGD 251
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Frame = -1
Query: 320 VYCISLSAQGGRAVCVSDKGTVHVW--ARGTHVAAARAPPDTRALCALTDDNSAVVICED 147
VYC S+ + V V VW G + + D CA + D+S ++ C
Sbjct: 513 VYCCKFSSDSSKVVSCGTDNHVKVWDSQSGRQLLSISGHGDVVNCCAFSHDDSRIISCSA 572
Query: 146 GTFHKFTFAAEG 111
K A+ G
Sbjct: 573 DQTVKIWDASSG 584
>SB_18907| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 444
Score = 29.5 bits (63), Expect = 0.66
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWARGTHVAAA---RAPPD---TRALCALTDDNSAV 162
DV + +SA +SD+GTV+ W GT+ A+ PD + LT ++ +
Sbjct: 137 DVNIVMVSAGDSHTAALSDQGTVYAW--GTYRDASGQIGLQPDGVKKKPAVILTSESDRI 194
Query: 161 VICEDGTFHKFTFAAEGN 108
+ G H GN
Sbjct: 195 IKIASGNDHTAALTTSGN 212
>SB_7970| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 651
Score = 29.5 bits (63), Expect = 0.66
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Frame = -1
Query: 311 ISLSAQGGRAVCVSDKGTVHVWARGTHVAAARAPPDTRALCALTDD--NSAVVICEDGTF 138
+++SA ++ +S G V W G + L + VV G +
Sbjct: 339 VAVSAGSDHSIAISADGAVWSWGDGDFGKLGHGDEQNQLLPTKKEAFAGQRVVAVSAGEY 398
Query: 137 HKFTFAAEGNCHRSDFEYFLQVGDDDEFLQ 48
H A+G F Y Q+G D+ +Q
Sbjct: 399 HSLAIIADGAVWSWGFGYHGQLGHGDQQIQ 428
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWA--RGTHVAAARAPPDTRALCALTDDNSAVVI-C 153
D++ ++++ G + + D V VW+ G +A+ ++ + ++ D +V
Sbjct: 918 DIFAVAVTPDGSKVISSGDDTQVKVWSLESGEELASLHGHSESVRIVTVSPDGLTIVSGS 977
Query: 152 EDGTFHKFTFAA 117
ED TF + A+
Sbjct: 978 EDATFKIWRIAS 989
>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
Length = 375
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 239 GTHVAAARAPPDTRALCALTDDNSAVVICEDGTFHKFTFAAEGNCHRSDFE 87
G+ VA + +T + TD+ S V C D +E NCH SD +
Sbjct: 321 GSLVAKVKVSTET-TIEERTDNFSCKVTCTDDNHCMNEVKSEDNCHHSDIK 370
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 314 CISLSAQGGRAVCVSDKGTVH 252
C+ S G + +C++D GT H
Sbjct: 878 CLDFSTTGCQQLCINDPGTYH 898
>SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 70 PTCKKYSKSDR*QFPSAANVNLWK 141
P C K+SKS R + P+AA L K
Sbjct: 330 PDCVKFSKSQRAREPTAAEQGLGK 353
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,388,914
Number of Sequences: 59808
Number of extensions: 116713
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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