Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0619
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    25   9.5  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    25   9.5  
AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical...    25   9.5  

>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
           protein K04D7.5b protein.
          Length = 1287

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 97  PTLNISCRLETTT--NSYND-DCCTIKFTLFEL 8
           PTLN SC + TTT   SY D D  T+K +  E+
Sbjct: 795 PTLNTSCHITTTTCSVSYEDVDVGTLKKSYVEI 827


>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
           protein K04D7.5a protein.
          Length = 1338

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 97  PTLNISCRLETTT--NSYND-DCCTIKFTLFEL 8
           PTLN SC + TTT   SY D D  T+K +  E+
Sbjct: 795 PTLNTSCHITTTTCSVSYEDVDVGTLKKSYVEI 827


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 118 RKETVIGPTLNISCRLETTT 59
           R  T IG TLN S RL+TTT
Sbjct: 768 RTPTRIGTTLNSSKRLKTTT 787


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 118 RKETVIGPTLNISCRLETTT 59
           R  T IG TLN S RL+TTT
Sbjct: 768 RTPTRIGTTLNSSKRLKTTT 787


>AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical
           protein W06H8.6 protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/35 (22%), Positives = 24/35 (68%)
 Frame = -1

Query: 197 ALCALTDDNSAVVICEDGTFHKFTFAAEGNCHRSD 93
           +L  +++D +A+++  DGT  ++++  E +C+ ++
Sbjct: 144 SLVGMSNDTTAMLMEVDGTGDEYSWGTEKDCYNNE 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,384,791
Number of Sequences: 27780
Number of extensions: 83336
Number of successful extensions: 233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)