Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0619
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   8.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   8.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   8.6  

>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 82  SCRLETTTNSYNDDCCTIKF 23
           +C+++ T   ++D  C +KF
Sbjct: 110 TCKIDITWFPFDDQHCDMKF 129


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 82  SCRLETTTNSYNDDCCTIKF 23
           +C+++ T   ++D  C +KF
Sbjct: 110 TCKIDITWFPFDDQHCDMKF 129


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 82  SCRLETTTNSYNDDCCTIKF 23
           +C+++ T   ++D  C +KF
Sbjct: 178 TCKIDITWFPFDDQHCDMKF 197


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 82  SCRLETTTNSYNDDCCTIKF 23
           +C+++ T   ++D  C +KF
Sbjct: 178 TCKIDITWFPFDDQHCDMKF 197


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 82  SCRLETTTNSYNDDCCTIKF 23
           +C+++ T   ++D  C +KF
Sbjct: 147 TCKIDITWFPFDDQRCEMKF 166


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 255 HRALVRHTHRAPALSAQT 308
           HR L RH  R  A S +T
Sbjct: 333 HRTLERHNIRTVAQSDET 350


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 255 HRALVRHTHRAPALSAQT 308
           HR L RH  R  A S +T
Sbjct: 333 HRTLERHNIRTVAQSDET 350


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 255 HRALVRHTHRAPALSAQT 308
           HR L RH  R  A S +T
Sbjct: 333 HRTLERHNIRTVAQSDET 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,539
Number of Sequences: 438
Number of extensions: 969
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)