Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0619
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 31 0.18
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 28 1.2
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 27 2.2
At3g56440.1 68416.m06277 WD-40 repeat protein family contains 4 ... 27 2.2
At2g40810.2 68415.m05035 WD-40 repeat protein family similar to ... 27 2.2
At2g40810.1 68415.m05034 WD-40 repeat protein family similar to ... 27 2.2
At5g28030.2 68418.m03377 cysteine synthase, putative / O-acetyls... 26 5.0
At5g28030.1 68418.m03376 cysteine synthase, putative / O-acetyls... 26 5.0
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr... 26 5.0
At3g62770.2 68416.m07051 transport protein-related weak similari... 25 8.8
At3g03200.1 68416.m00316 no apical meristem (NAM) family protein... 25 8.8
At1g52480.1 68414.m05924 F-box family protein ; similar to SKP1... 25 8.8
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWARGTH 231
D+ + ++A G + ++DKG V+ W RG H
Sbjct: 247 DLTLVDIAAGGWHSTALTDKGEVYGWGRGEH 277
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
protein
Length = 454
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 257 VHVWARGTH--VAAARAPPDTRALCALTDDNSAVVICEDGTFHKF 129
+ +W R + +RA + LC D AVV CEDGT F
Sbjct: 201 ISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVF 245
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWARGTH 231
D+ + ++A G + ++++G V+ W RG H
Sbjct: 247 DLTLVDIAAGGWHSTALTNEGEVYGWGRGEH 277
>At3g56440.1 68416.m06277 WD-40 repeat protein family contains 4
WD-40 repeats (PF00400) (2 weak); PS00778 Histidine acid
phosphatases active site signature; similar to Gsa12p
(GI:18307769) {Pichia pastoris}similar to
uncharacterized protein JM5 (GP:3114828) [Homo sapiens]
Length = 391
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWA 243
D+Y I+LS SDKGTVH+++
Sbjct: 252 DIYSIALSPNVQWLAVSSDKGTVHIFS 278
>At2g40810.2 68415.m05035 WD-40 repeat protein family similar to
Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
PF00400: WD domain, G-beta repeats
Length = 393
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWA 243
D+Y I+LS SDKGTVH+++
Sbjct: 248 DIYSIALSPNVQWLAVSSDKGTVHIFS 274
>At2g40810.1 68415.m05034 WD-40 repeat protein family similar to
Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
PF00400: WD domain, G-beta repeats
Length = 393
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVWA 243
D+Y I+LS SDKGTVH+++
Sbjct: 248 DIYSIALSPNVQWLAVSSDKGTVHIFS 274
>At5g28030.2 68418.m03377 cysteine synthase, putative /
O-acetylserine (thiol)-lyase, putative / O-acetylserine
sulfhydrylase, putative similar to O-acetylserine(thiol)
lyase [Brassica juncea] GI:2245144; contains Pfam
profile PF00291: Pyridoxal-phosphate dependent enzyme
Length = 323
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 44 IIVGIRRRLQPARNIQSRTDDSFLPQQ 124
I +GI+ +L+ A+ I S+T ++P Q
Sbjct: 123 ISIGIKGQLEKAKEILSKTPGGYIPHQ 149
>At5g28030.1 68418.m03376 cysteine synthase, putative /
O-acetylserine (thiol)-lyase, putative / O-acetylserine
sulfhydrylase, putative similar to O-acetylserine(thiol)
lyase [Brassica juncea] GI:2245144; contains Pfam
profile PF00291: Pyridoxal-phosphate dependent enzyme
Length = 323
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 44 IIVGIRRRLQPARNIQSRTDDSFLPQQ 124
I +GI+ +L+ A+ I S+T ++P Q
Sbjct: 123 ISIGIKGQLEKAKEILSKTPGGYIPHQ 149
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 467
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 173 NSAVVICEDGTFHKFTFAAEGNC 105
+S V I E+G H FT +G C
Sbjct: 430 DSNVAITEEGVVHTFTLRPQGGC 452
>At3g62770.2 68416.m07051 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); putative proteins - different
species
Length = 432
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 323 DVYCISLSAQGGRAVCVSDKGTVHVW 246
++Y ++ S+ SDKGTVHV+
Sbjct: 303 EIYSLAFSSNAQWLAVSSDKGTVHVF 328
>At3g03200.1 68416.m00316 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) {Arabidopsis thaliana}
Length = 479
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 152 EDGTFHKFTFAAEGNCHRSDF-EYFLQVGDDDEFL 51
+ G F FTFAA + H + + + VG+ DE L
Sbjct: 272 DHGVFDDFTFAASNSNHNNSVGDQVIHVGNYDEQL 306
>At1g52480.1 68414.m05924 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 211
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 170 SAVVICEDGTFHKFTFAAEGNCHRSDFE 87
SAV IC DGTF F + +C D E
Sbjct: 178 SAVGICIDGTFEFLRFKRDQDCLFCDNE 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,966,269
Number of Sequences: 28952
Number of extensions: 75285
Number of successful extensions: 243
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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