Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0617
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...   124   6e-30
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   2.7  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   2.7  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   6.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   8.2  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    25   8.2  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   8.2  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score =  124 bits (300), Expect = 6e-30
 Identities = 62/106 (58%), Positives = 77/106 (72%)
 Frame = +1

Query: 127 KHRFLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMV 306
           K + LAGGRGKG F +GL+GGVR V     A   A +M+   L+T+QTG AG+ICN+V V
Sbjct: 68  KAQVLAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKICNVVYV 127

Query: 307 TERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAI 444
            ERKF R+EYY AI+M+R    P+I+AS QGGV+IE VAAENP AI
Sbjct: 128 CERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAI 173



 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 18/42 (42%), Positives = 28/42 (66%)
 Frame = +3

Query: 15  YTLLRDHGIPVPKFNVAKTXDEAIKFATELNTKDIVLKAQVL 140
           + +LR  G+ VP+   A++ +EA K A +L   D+V+KAQVL
Sbjct: 31  HDILRKFGVDVPRGAPARSGEEAEKVARDLKVTDLVVKAQVL 72


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 230  AISPATSGVLTIRTPPLSPFLKVPFPRPPA 141
            +++PAT+   T+  P  S F  VP P PPA
Sbjct: 1508 SVAPATAPSSTL-PPSQSSFAHVPSPAPPA 1536


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 13  VILYYGTMEFLYPNLMWPKP 72
           V++ +GT EF+ P L W  P
Sbjct: 123 VVVQFGTTEFVSPPLKWESP 142


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 357 FHHNCHVVFPAWELPLCDHDHVANS 283
           +H  CH+++  W + LC    +  S
Sbjct: 263 WHVPCHMIYKFWNVKLCQKTSIETS 287


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = -1

Query: 348  NCHVVFPAWELPLCDHDHVAN-------SSCCPCLFCY*ELFKHL 235
            +C +V P+ E  +    H+ N       S+C  C   Y ++FKHL
Sbjct: 1039 SCDMVLPSEEFEMHLRGHLNNIRLNCEVSNCKKCFSNYEDMFKHL 1083


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 163 YLSLDHQPRTCAFRTMSLVLSSVANLIASSSVLAT 59
           Y S DH     AF+++++ + +  +L  SS V +T
Sbjct: 178 YGSNDHHRAESAFKSLAVAMRAATSLTGSSEVPST 212


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 55  LMWPKPXMRQLSLPQNSIPKT 117
           L W +    QL +P N++P+T
Sbjct: 358 LAWGRDDRHQLGIPDNALPET 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,287
Number of Sequences: 5004
Number of extensions: 42639
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)