Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0617
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   2e-21
SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              31   0.68 
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)           27   8.4  

>SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 65/106 (61%)
 Frame = +1

Query: 127 KHRFLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMV 306
           K + LAGGRGKGTF +GL GGV +    +  G    KM    L TKQT   G +   VMV
Sbjct: 39  KAQILAGGRGKGTFDSGLNGGVHLTKLADEVGYFTAKMFGYRLKTKQTPPEGVMVTRVMV 98

Query: 307 TERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAI 444
            E     RE Y+AI+M+R F GPVI+AS +GG++IE+VA   P+ I
Sbjct: 99  AEAYDIERETYLAILMDREFMGPVIVASPKGGMDIEEVAKTTPEYI 144


>SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
 Frame = +1

Query: 127 KHRFLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMV 306
           K + LAGGRGKG F+ GLKGGVR+V + + A ++A +M+ + L TKQTG  GRICN V V
Sbjct: 90  KAQVLAGGRGKGKFEGGLKGGVRIVFSADEAKEVASRMIGKKLFTKQTGELGRICNEVFV 149

Query: 307 TERKFPRREYYVAIMMERSFNG--PVIIASSQGGVNIEDVAA 426
               F      +A M     +G  P       GG +IE V A
Sbjct: 150 ----FNGAGLAMATMDIIQLHGGEPANFLDIGGGASIEQVEA 187


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 RKFPRREYYVAIM-MERSFNGPVIIASSQGGVNIEDVAAENPD 438
           R+F + E Y+A    ERS+  P I+ +S G    E+   + PD
Sbjct: 330 RRFEKSEPYMAWQGTERSYGSPAIVQASYGSTPYENENGQKPD 372


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +3

Query: 228 SRKDA*TTPSNKTNRGSRTNLQHGHGHREEVPTQGILRGNYDGTQFQWSSHHCFIS 395
           SRK     PS  T R       HG G  +++P + I R N     F  SS  CF S
Sbjct: 719 SRKRRLAVPSTPTKR-------HGSGRFKDLPPRKIRRDNSSHDSFSSSSSCCFSS 767


>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
          Length = 750

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 432 IFSCNIFNVDTTLR*SNDDWTIETAFHHNCHVVFPAWE 319
           +F+ ++ +VD  +   ++   +E A H+ C  V+  WE
Sbjct: 88  LFARSMISVDLNVTHEDEPHQVEPALHYWCDGVYATWE 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,657
Number of Sequences: 59808
Number of extensions: 338527
Number of successful extensions: 897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)