Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0617
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 140 7e-34
U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 103 9e-23
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 4.2
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 4.2
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 4.2
U70854-15|AAB09154.1| 130|Caenorhabditis elegans Hypothetical p... 27 5.6
U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeo... 27 5.6
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 27 9.8
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 27 9.8
>Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical
protein F47B10.1 protein.
Length = 435
Score = 140 bits (338), Expect = 7e-34
Identities = 68/120 (56%), Positives = 87/120 (72%)
Frame = +1
Query: 127 KHRFLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMV 306
K + LAGGRGKG F +GL+GGV++V TP+ AG M+ L+TKQT G+ C VMV
Sbjct: 69 KAQVLAGGRGKGRFSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMV 128
Query: 307 TERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGITDD 486
+R F RREYY +I ++R+ NGP++IASSQGGVNIE+VAA NPDAI PID+ GIT +
Sbjct: 129 CKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKE 188
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 6 HEGYTLLRDHGIPVPKFNVAKTXDEAIKFATELNTKDIVLKAQVL 140
H G +L+++ I VP F VA+ + A A + KD V+KAQVL
Sbjct: 29 HHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVL 73
>U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical
protein C50F7.4 protein.
Length = 415
Score = 103 bits (246), Expect = 9e-23
Identities = 55/123 (44%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Frame = +1
Query: 127 KHRFLAGGRGKGTFKNGLKG--GVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMV 300
K + LAGGRGKG F NG KG GV + + A + +M+ + LVTKQT + G + V
Sbjct: 65 KAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKV 124
Query: 301 MVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGIT 480
M+ E +RE Y+A++M+R NGPV++AS GG++IE VA + P+ I PIDI G+T
Sbjct: 125 MIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMT 184
Query: 481 DDQ 489
+ Q
Sbjct: 185 EGQ 187
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 400 GVNIEDVAAENPDAITYEP 456
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 400 GVNIEDVAAENPDAITYEP 456
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 400 GVNIEDVAAENPDAITYEP 456
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>U70854-15|AAB09154.1| 130|Caenorhabditis elegans Hypothetical
protein F38A5.8 protein.
Length = 130
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -3
Query: 160 LSLDHQPRTCAFRTMSLVLSSVANLIA-SSSVLATLNLGTGIPWSRSRV 17
+S+ H+P +C ++ +L + +IA S+ VL + + G G+PW +++
Sbjct: 78 VSIKHRPNSCDVCHVATLLFLIVMVIAISTPVLLSASKG-GLPWIENKL 125
>U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeobox
protein 1 protein.
Length = 132
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 290 QIRPAAPVCFVTR-SCLSIFPAISPATSGVLTIRTPPLSPF 171
QI+P P +T S L + P ISPA S VL + PL+ F
Sbjct: 78 QIQPILPANPITSFSSLLLPPIISPANSAVLQGTSIPLTLF 118
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 311 SVTMTMLQIRPAAPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPAKNL 132
S T ++ + P C T+SC + SP TS + P+ + V P + N+
Sbjct: 450 SCTECLVSVDPLCQWCHPTQSCTTSARCTSPVTSQCPIVDGDPIPSIVSVNSSTPISFNI 509
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 311 SVTMTMLQIRPAAPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPAKNL 132
S T ++ + P C T+SC + SP TS + P+ + V P + N+
Sbjct: 452 SCTECLVSVDPLCQWCHPTQSCTTSARCTSPVTSQCPIVDGDPIPSIVSVNSSTPISFNI 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,505,316
Number of Sequences: 27780
Number of extensions: 248371
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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