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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0617
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical pr...   140   7e-34
U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical pr...   103   9e-23
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    28   4.2  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    28   4.2  
U70854-15|AAB09154.1|  130|Caenorhabditis elegans Hypothetical p...    27   5.6  
U55376-2|AAA98004.1|  132|Caenorhabditis elegans C.elegans homeo...    27   5.6  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   9.8  

>Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical
           protein F47B10.1 protein.
          Length = 435

 Score =  140 bits (338), Expect = 7e-34
 Identities = 68/120 (56%), Positives = 87/120 (72%)
 Frame = +1

Query: 127 KHRFLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMV 306
           K + LAGGRGKG F +GL+GGV++V TP+     AG M+   L+TKQT   G+ C  VMV
Sbjct: 69  KAQVLAGGRGKGRFSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMV 128

Query: 307 TERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGITDD 486
            +R F RREYY +I ++R+ NGP++IASSQGGVNIE+VAA NPDAI   PID+  GIT +
Sbjct: 129 CKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKE 188



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 6   HEGYTLLRDHGIPVPKFNVAKTXDEAIKFATELNTKDIVLKAQVL 140
           H G  +L+++ I VP F VA+  + A   A  +  KD V+KAQVL
Sbjct: 29  HHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVL 73


>U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical
           protein C50F7.4 protein.
          Length = 415

 Score =  103 bits (246), Expect = 9e-23
 Identities = 55/123 (44%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
 Frame = +1

Query: 127 KHRFLAGGRGKGTFKNGLKG--GVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMV 300
           K + LAGGRGKG F NG KG  GV +    + A +   +M+ + LVTKQT + G   + V
Sbjct: 65  KAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKV 124

Query: 301 MVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGIT 480
           M+ E    +RE Y+A++M+R  NGPV++AS  GG++IE VA + P+ I   PIDI  G+T
Sbjct: 125 MIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMT 184

Query: 481 DDQ 489
           + Q
Sbjct: 185 EGQ 187


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 400 GVNIEDVAAENPDAITYEP 456
           G+ IE+VAA+ P   TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 400 GVNIEDVAAENPDAITYEP 456
           G+ IE+VAA+ P   TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 400 GVNIEDVAAENPDAITYEP 456
           G+ IE+VAA+ P   TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390


>U70854-15|AAB09154.1|  130|Caenorhabditis elegans Hypothetical
           protein F38A5.8 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 160 LSLDHQPRTCAFRTMSLVLSSVANLIA-SSSVLATLNLGTGIPWSRSRV 17
           +S+ H+P +C    ++ +L  +  +IA S+ VL + + G G+PW  +++
Sbjct: 78  VSIKHRPNSCDVCHVATLLFLIVMVIAISTPVLLSASKG-GLPWIENKL 125


>U55376-2|AAA98004.1|  132|Caenorhabditis elegans C.elegans homeobox
           protein 1 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 290 QIRPAAPVCFVTR-SCLSIFPAISPATSGVLTIRTPPLSPF 171
           QI+P  P   +T  S L + P ISPA S VL   + PL+ F
Sbjct: 78  QIQPILPANPITSFSSLLLPPIISPANSAVLQGTSIPLTLF 118


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -2

Query: 311 SVTMTMLQIRPAAPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPAKNL 132
           S T  ++ + P    C  T+SC +     SP TS    +   P+   + V    P + N+
Sbjct: 450 SCTECLVSVDPLCQWCHPTQSCTTSARCTSPVTSQCPIVDGDPIPSIVSVNSSTPISFNI 509


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -2

Query: 311 SVTMTMLQIRPAAPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPAKNL 132
           S T  ++ + P    C  T+SC +     SP TS    +   P+   + V    P + N+
Sbjct: 452 SCTECLVSVDPLCQWCHPTQSCTTSARCTSPVTSQCPIVDGDPIPSIVSVNSSTPISFNI 511


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,505,316
Number of Sequences: 27780
Number of extensions: 248371
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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