BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P5PG0617 (492 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 140 7e-34 U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 103 9e-23 Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 4.2 AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 4.2 AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 4.2 U70854-15|AAB09154.1| 130|Caenorhabditis elegans Hypothetical p... 27 5.6 U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeo... 27 5.6 Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 27 9.8 AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 27 9.8 >Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical protein F47B10.1 protein. Length = 435 Score = 140 bits (338), Expect = 7e-34 Identities = 68/120 (56%), Positives = 87/120 (72%) Frame = +1 Query: 127 KHRFLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMV 306 K + LAGGRGKG F +GL+GGV++V TP+ AG M+ L+TKQT G+ C VMV Sbjct: 69 KAQVLAGGRGKGRFSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMV 128 Query: 307 TERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGITDD 486 +R F RREYY +I ++R+ NGP++IASSQGGVNIE+VAA NPDAI PID+ GIT + Sbjct: 129 CKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKE 188 Score = 39.5 bits (88), Expect = 0.001 Identities = 19/45 (42%), Positives = 27/45 (60%) Frame = +3 Query: 6 HEGYTLLRDHGIPVPKFNVAKTXDEAIKFATELNTKDIVLKAQVL 140 H G +L+++ I VP F VA+ + A A + KD V+KAQVL Sbjct: 29 HHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVL 73 >U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical protein C50F7.4 protein. Length = 415 Score = 103 bits (246), Expect = 9e-23 Identities = 55/123 (44%), Positives = 78/123 (63%), Gaps = 2/123 (1%) Frame = +1 Query: 127 KHRFLAGGRGKGTFKNGLKG--GVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMV 300 K + LAGGRGKG F NG KG GV + + A + +M+ + LVTKQT + G + V Sbjct: 65 KAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKV 124 Query: 301 MVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGIT 480 M+ E +RE Y+A++M+R NGPV++AS GG++IE VA + P+ I PIDI G+T Sbjct: 125 MIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMT 184 Query: 481 DDQ 489 + Q Sbjct: 185 EGQ 187 >Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical protein F39H11.2 protein. Length = 505 Score = 27.9 bits (59), Expect = 4.2 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +1 Query: 400 GVNIEDVAAENPDAITYEP 456 G+ IE+VAA+ P TYEP Sbjct: 372 GIKIEEVAAKYPSESTYEP 390 >AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor protein. Length = 454 Score = 27.9 bits (59), Expect = 4.2 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +1 Query: 400 GVNIEDVAAENPDAITYEP 456 G+ IE+VAA+ P TYEP Sbjct: 372 GIKIEEVAAKYPSESTYEP 390 >AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor protein. Length = 505 Score = 27.9 bits (59), Expect = 4.2 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +1 Query: 400 GVNIEDVAAENPDAITYEP 456 G+ IE+VAA+ P TYEP Sbjct: 372 GIKIEEVAAKYPSESTYEP 390 >U70854-15|AAB09154.1| 130|Caenorhabditis elegans Hypothetical protein F38A5.8 protein. Length = 130 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 160 LSLDHQPRTCAFRTMSLVLSSVANLIA-SSSVLATLNLGTGIPWSRSRV 17 +S+ H+P +C ++ +L + +IA S+ VL + + G G+PW +++ Sbjct: 78 VSIKHRPNSCDVCHVATLLFLIVMVIAISTPVLLSASKG-GLPWIENKL 125 >U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeobox protein 1 protein. Length = 132 Score = 27.5 bits (58), Expect = 5.6 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2 Query: 290 QIRPAAPVCFVTR-SCLSIFPAISPATSGVLTIRTPPLSPF 171 QI+P P +T S L + P ISPA S VL + PL+ F Sbjct: 78 QIQPILPANPITSFSSLLLPPIISPANSAVLQGTSIPLTLF 118 >Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein K04B12.1 protein. Length = 1764 Score = 26.6 bits (56), Expect = 9.8 Identities = 15/60 (25%), Positives = 25/60 (41%) Frame = -2 Query: 311 SVTMTMLQIRPAAPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPAKNL 132 S T ++ + P C T+SC + SP TS + P+ + V P + N+ Sbjct: 450 SCTECLVSVDPLCQWCHPTQSCTTSARCTSPVTSQCPIVDGDPIPSIVSVNSSTPISFNI 509 >AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. Length = 1766 Score = 26.6 bits (56), Expect = 9.8 Identities = 15/60 (25%), Positives = 25/60 (41%) Frame = -2 Query: 311 SVTMTMLQIRPAAPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPAKNL 132 S T ++ + P C T+SC + SP TS + P+ + V P + N+ Sbjct: 452 SCTECLVSVDPLCQWCHPTQSCTTSARCTSPVTSQCPIVDGDPIPSIVSVNSSTPISFNI 511 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,505,316 Number of Sequences: 27780 Number of extensions: 248371 Number of successful extensions: 723 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 702 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 722 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 924715866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -