Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0614
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 0.93
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 28 1.2
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.8
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 2.8
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 5.0
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 5.0
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 5.0
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 25 6.5
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 8.7
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 25 8.7
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 400 LRASVTSI*RDLPSIAPRTAPLSPGRTYDPE 308
LR TS ++LP+I PRT PL+ Y+ E
Sbjct: 504 LRLERTSPVKELPAIRPRTIPLNGVAPYESE 534
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 164 CKSQMPRTPLFSSFEIQLNPRH 99
C+S +P T FS+FE+ L R+
Sbjct: 226 CESNLPLTETFSNFEVSLGTRY 247
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 206 FRSSQEPVVTRSSLCKSQMPRTPLFSSFEIQLNPRH 99
+ +++P +R S + PL SS E+Q NPR+
Sbjct: 141 YAKNRQPTSSRQLANYSGISSAPLGSSLELQSNPRY 176
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +1
Query: 76 VETEQKFICRGFSWISKEEKSGVRGICDLHSEDLVTTGSWLLRKTSGATYYRRVICLNIS 255
V+ + F C GF + E R L S+ L T S ++ + RV N+
Sbjct: 894 VKEDLPFYCIGFKSTAPEYTLRTRIWASLRSQTLYRTASGMMNYSRALKLLYRVEQPNLL 953
Query: 256 VDCD 267
DCD
Sbjct: 954 DDCD 957
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 143 TPLFSSFEIQLNPRHMNFCSVSTCFLALVFGAILQCEFDVS 21
+PLF+ + RH+ + L FG L C F++S
Sbjct: 106 SPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELS 146
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 341 SPFPGTYIRPRKTPRGLYVMFKPLLSQSTLIFKHMTRL**VAPDVFRSSQEP 186
SPF GT P T GL +F+P S + H+ + + P++F++ +EP
Sbjct: 348 SPFGGTDSFPLPTDTGLDSLFEP---DSAIENSHLKNV-VMEPELFQAWREP 395
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 88 VPSPHAFLHSSLVRFFSVNSTCPSCRIP 5
+P H F + + + VN TC CR P
Sbjct: 412 LPCKHYFHENCIKPWLRVNGTCAICRAP 439
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 116 GSRRKRKVEFEAFATCTVKILLL 184
G+RR R++ ++ F C KIL +
Sbjct: 146 GTRRTRRILYDRFKNCGFKILFI 168
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 8.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = -1
Query: 308 KTPRGLYVMFKPLLSQSTLIFKHMTRL**VAPDVFRSSQEPVVTRSSLCKSQMPR---TP 138
+TP + + +S+ L +K + P V + E + S+L K +P P
Sbjct: 315 QTPSSFNLFQQLTISKDLLEYKSFR----IPPLVEAAESEKISQLSTLEKRTLPSFPYNP 370
Query: 137 LFSSFEIQLNPRHMNFCSVST 75
FSS +++P H ++ST
Sbjct: 371 FFSSSTAEIDPYHFQGLTLST 391
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 161 KSQMPRTPLFSSFEIQLNPRHMNFCSVSTCFLALVFGAILQCEFDVSLV 15
K+ R+ S+E L HM +CS ++ G I C SLV
Sbjct: 131 KNCFQRSGFIGSYEESLFSGHMPYCSSVPFEFSIEIGVISFCRCKPSLV 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,552
Number of Sequences: 5004
Number of extensions: 67356
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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