Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0614
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0258 + 27950196-27950749,27953670-27954570 32 0.31
01_06_1052 + 34129126-34130490 30 1.6
09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420 29 2.9
06_03_1466 + 30350112-30350978 28 5.0
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406 28 6.7
03_02_0947 + 12640438-12640824 28 6.7
01_01_0356 - 2814175-2815401 28 6.7
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 27 8.8
09_06_0232 - 21737299-21739233 27 8.8
03_01_0524 + 3943581-3943610,3943889-3944050,3944403-3944637,394... 27 8.8
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 406 HILRASVTSI*RDLPSIAPRTAPLSPGRTYDPEKLRA-ACMLCSNPCCRNPRLYS 245
H A+ ++ R+ S+ P AP SP RT+ P+K R A + CS+ CR +S
Sbjct: 116 HRAAAAASASPRNASSL-PAPAPASPRRTFRPDKSRTWAPIPCSSATCRESLPFS 169
>01_06_1052 + 34129126-34130490
Length = 454
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -2
Query: 373 RDLP-SIAPRTAPLSPGRTYDPEKLRAACMLCSNPCCRNPRLY 248
R+LP S++P TA L+P ++ ++ +A+C S C +P+L+
Sbjct: 35 RNLPISLSPPTAALTPTTSHLEQQDQASCDTTSTLDCADPQLF 77
>09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420
Length = 217
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 334 SPGRTYDPEKLRAACMLC---SNPCCRNPRLYSNI 239
S G TY+P K+R C+ NP RN + SNI
Sbjct: 106 SVGSTYEPSKVRKTCIRIYTRINPILRNKTMTSNI 140
>06_03_1466 + 30350112-30350978
Length = 288
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 340 PLSPGRTYDPEKLRAACML--CSNPCCRNPRL 251
PLSP R++ P AAC + S PC +P L
Sbjct: 12 PLSPARSFKPRSAAAACHVRSISLPCRSHPLL 43
>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
Length = 388
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 603 PSVISNSERGVYMCGCARSRRTSHTNPSVSCRL 505
PS S+ +CGCAR RR +P R+
Sbjct: 44 PSPESSCRSNAAVCGCARCRRPDLISPGTGMRM 76
>03_02_0947 + 12640438-12640824
Length = 128
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 76 HAFLHSSLVRFFSVNSTCPSCR 11
H F + R+F NSTCP CR
Sbjct: 66 HRFHVECIDRWFRANSTCPFCR 87
>01_01_0356 - 2814175-2815401
Length = 408
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 331 GKGEQCGARWKGGPVKLTLPMHGECDVNFAYGISNGPTGVINRTMAYVMVMIQNNPIIQT 510
G G+ A W+ + +TLP V +G+ G ++ R+ V V+ + +I
Sbjct: 304 GDGDDDAAAWRRDVMWMTLPAPYPYCVPLMHGLDMGSVAMMYRSSGAVFVVDLDKKVIDR 363
Query: 511 AGD 519
A D
Sbjct: 364 AMD 366
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 88 VPSPHAFLHSSLVRFFSVNSTCPSCR 11
+P H + S ++ +FS +TCP CR
Sbjct: 892 LPCMHLYHSSCILPWFSSRNTCPVCR 917
>09_06_0232 - 21737299-21739233
Length = 644
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 88 VPSPHAFLHSSLVRFFSVNSTCPSCRIP 5
+P P F+++SL+R + NS CP +P
Sbjct: 70 IPDPDRFVYNSLIRAY-CNSHCPQEALP 96
>03_01_0524 +
3943581-3943610,3943889-3944050,3944403-3944637,
3945626-3945666,3946101-3946145,3947119-3947246,
3947446-3947554,3947641-3947694
Length = 267
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 88 VPSPHAFLHSSLVRFFSVNSTCPSC 14
+P H + S + R+ S+N CP C
Sbjct: 231 LPCKHVYHASCVTRWLSINKVCPVC 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,914,874
Number of Sequences: 37544
Number of extensions: 477594
Number of successful extensions: 1550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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