Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0614
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38547| Best HMM Match : COX5B (HMM E-Value=2.5)                     31   0.97 
SB_32863| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-06)         29   2.9  
SB_13044| Best HMM Match : Vps26 (HMM E-Value=0)                       29   2.9  
SB_59416| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_2792| Best HMM Match : Sod_Fe_N (HMM E-Value=3.5)                   28   6.8  
SB_18706| Best HMM Match : Transposase_11 (HMM E-Value=0.44)           28   6.8  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   9.0  
SB_54783| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              27   9.0  

>SB_38547| Best HMM Match : COX5B (HMM E-Value=2.5)
          Length = 405

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 30  EFTLKNRTKDECKKACGDGTKVHMSRI 110
           EF L+ R ++EC K CG G K    R+
Sbjct: 108 EFVLRGRLRNECYKTCGFGCKSRAPRL 134


>SB_32863| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-06)
          Length = 309

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = -1

Query: 416 KLTSHSPCIGNVNLTGPPFHRAPHCSPFPGTYIRPRKTPRGLYVMFKPLLSQSTLIFKHM 237
           ++TSHS  + +  +T  P HR  +C   PG ++     P   Y+     +++    +K++
Sbjct: 230 RITSHSETLIDHIITNMP-HRVTYCDVLPGLHVSDHDAP---YIYVNVRVTRFVPRYKYI 285

Query: 236 TRL**VAPDVFRSSQEPVVTR 174
                +  D F+  Q P  T+
Sbjct: 286 RDERNLDLDAFKQEQLPRTTQ 306


>SB_13044| Best HMM Match : Vps26 (HMM E-Value=0)
          Length = 669

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 415 FAYGISNGPTGVINRTMAYVMVMIQNNPI 501
           F Y +SNG  GV +RT  Y  +  +N+ I
Sbjct: 526 FGYALSNGTVGVYDRTARYWRIKSKNHAI 554


>SB_59416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 115 WISKEEKSGVRGICDLHSEDLVTTGSWL 198
           W   EE+ G  G CD+ S  ++   SW+
Sbjct: 199 WEEHEEQYGGEGDCDMDSHKIIMINSWI 226


>SB_2792| Best HMM Match : Sod_Fe_N (HMM E-Value=3.5)
          Length = 290

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 388 PMHGECDVNFAYGISNGPTGVINRTMAYVMVMI 486
           P+H      F  G+ NGP    N +M+ V + +
Sbjct: 251 PLHNHLQAPFRMGVLNGPMQDFNESMSQVSIQV 283


>SB_18706| Best HMM Match : Transposase_11 (HMM E-Value=0.44)
          Length = 248

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 388 PMHGECDVNFAYGISNGPTGVINRTMAYVMVMIQ 489
           P+H      F  G+ NGP    N +M+ V + ++
Sbjct: 151 PLHNHLQAPFRMGVLNGPMQDFNESMSSVRISVE 184


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 6    GIRHEGHVEFTLKNRTKDECKKAC 77
            G  H GH ++ ++  + DEC + C
Sbjct: 2754 GGHHAGHFQYLMETNSTDECTRRC 2777


>SB_54783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 455 LMTPVGPFEIPYAKLTSHSPCIGNVNLTGPPFH 357
           L T   P   P+A   S+ PC+   + T P  H
Sbjct: 161 LATASAPLATPFALTRSNDPCLATASATAPNRH 193


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/84 (26%), Positives = 28/84 (33%)
 Frame = -1

Query: 548 PGEHPTRTHLSPAVCIMGLFWIITITYAIVLLMTPVGPFEIPYAKLTSHSPCIGNVNLTG 369
           P  HP  TH S       +    T    I    TP     IP+A  T+  P I   +   
Sbjct: 150 PTTHPHITHASTPTTHPHIAHASTTHPYITYASTPTTHPHIPHASTTTTHPYIARASTPT 209

Query: 368 PPFHRAPHCSPFPGTYIRPRKTPR 297
              H     +P    YI    TP+
Sbjct: 210 THPHITHASTPTTHPYIARASTPK 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,217,580
Number of Sequences: 59808
Number of extensions: 560246
Number of successful extensions: 1713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)