Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0613
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    26   3.5  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   6.1  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   6.1  

>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 366 KPSNSKKLSNERSIIIQVHNKLILFV 289
           KP +S ++ +E S +I++ N L+LF+
Sbjct: 246 KPGHSPEILDETSSVIRLSNDLVLFL 271


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 284 SVTKSINLLCTWIIIDLSLESFFEFDGL 367
           S T ++ ++C+   I LSLE  FEF G+
Sbjct: 23  SKTPTLGIVCSEGTISLSLEEGFEFVGV 50


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 323 IIDLSLESFFEFDGLKYVFIYY 388
           IIDL++  F   D LK+   YY
Sbjct: 599 IIDLNVSDFSTLDSLKFTVTYY 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,276
Number of Sequences: 5004
Number of extensions: 36500
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)