Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0613
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    28   4.2  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      28   4.2  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      28   4.2  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    27   7.4  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    27   7.4  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    27   7.4  
U23454-8|ABS19473.1|  153|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 200 PYK--LCKQNVSHSHHLQPTKRKHS 132
           PYK  +C++   H HHL   KR HS
Sbjct: 508 PYKCDICEKAFKHKHHLTEHKRLHS 532


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 200 PYK--LCKQNVSHSHHLQPTKRKHS 132
           PYK  +C++   H HHL   KR HS
Sbjct: 508 PYKCDICEKAFKHKHHLTEHKRLHS 532


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 200 PYK--LCKQNVSHSHHLQPTKRKHS 132
           PYK  +C++   H HHL   KR HS
Sbjct: 508 PYKCDICEKAFKHKHHLTEHKRLHS 532


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 548 VTLKSLEKYLFFTLVGVDITLMVNMQSMRQSF 453
           +TL  + KYL FT+V V ++++V + S+   F
Sbjct: 315 ITLPLIGKYLLFTMVMVTLSVVVTVISLNLHF 346


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 548 VTLKSLEKYLFFTLVGVDITLMVNMQSMRQSF 453
           +TL  + KYL FT+V V ++++V + S+   F
Sbjct: 315 ITLPLIGKYLLFTMVMVTLSVVVTVISLNLHF 346


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 548 VTLKSLEKYLFFTLVGVDITLMVNMQSMRQSF 453
           +TL  + KYL FT+V V ++++V + S+   F
Sbjct: 315 ITLPLIGKYLLFTMVMVTLSVVVTVISLNLHF 346


>U23454-8|ABS19473.1|  153|Caenorhabditis elegans Hypothetical
           protein C10A4.9 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 260 VFQRVITKSVTKSINLLCTWIIIDLSL-ESFFEFDGLK 370
           +F RVI K +   I +L +W+++ + L  SF++ + LK
Sbjct: 91  LFTRVIRKKIAVIILILFSWLVLSILLASSFYKKNTLK 128


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
           protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 196 TSFANKMFHTHTIYN--QQNANTQFNGNI 116
           T  A ++F TH +YN  Q + N QFN  I
Sbjct: 79  THSATEIFETHCVYNLFQHSGNYQFNSFI 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,226,986
Number of Sequences: 27780
Number of extensions: 200718
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)