Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0613
(583 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 26 0.31
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 26 0.31
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 26 0.31
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 26 0.31
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 26 0.31
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 0.72
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 24 0.95
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 24 1.3
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 3.8
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.1
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.8 bits (54), Expect = 0.31
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 196 TSFANKMFHTHTIYNQQNANTQFNGNIKQTRLVYN 92
+S +NK H + Y N +N N K +L YN
Sbjct: 83 SSLSNKTIHNNNNYKYNYNNNNYNNNCK--KLYYN 115
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.8 bits (54), Expect = 0.31
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 196 TSFANKMFHTHTIYNQQNANTQFNGNIKQTRLVYN 92
+S +NK H + Y N +N N K +L YN
Sbjct: 83 SSLSNKTIHNNNNYKYNYNNNNYNNNCK--KLYYN 115
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.8 bits (54), Expect = 0.31
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 196 TSFANKMFHTHTIYNQQNANTQFNGNIKQTRLVYN 92
+S +NK H + Y N +N N K +L YN
Sbjct: 83 SSLSNKTIHNNNNYKYNYNNNNYNNNCK--KLYYN 115
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.8 bits (54), Expect = 0.31
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Frame = -3
Query: 548 VTLKSLEKYLFFTLVGVDITLMVNMQSMRQSF-------IARFYNITYLSIL 414
+T+ L KYL FT+V V ++++V + + +F +AR+ + ++ +L
Sbjct: 294 LTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVL 345
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 25.8 bits (54), Expect = 0.31
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 196 TSFANKMFHTHTIYNQQNANTQFN 125
+S +NK H + YN N N +N
Sbjct: 316 SSLSNKTIHNNNNYNNNNYNNNYN 339
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 24.6 bits (51), Expect = 0.72
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 199 HTSFANKMFHTHTIYNQQNANTQFNGNIKQTRLVYNQI 86
H + K + + YN N N +N N K +L YN I
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCK--KLYYNII 359
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = -1
Query: 196 TSFANKMFHTHTIYNQQNANTQFNGN 119
+S +NK H + Y N +N N
Sbjct: 316 SSLSNKTIHNNNNYKYNYNNNNYNNN 341
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 24.2 bits (50), Expect = 0.95
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 500 VDITLMVNMQSMRQSFIARFYNITYLSILNLK 405
V+ T + ++ ++ RFYN+ Y I N+K
Sbjct: 539 VNATKQIKDEANKKGVSLRFYNVVYKLIDNIK 570
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.8 bits (49), Expect = 1.3
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -1
Query: 196 TSFANKMFHTHTIYNQQNANT-QFNGN 119
+S +NK H + YN N N +N N
Sbjct: 83 SSLSNKTIHNNNNYNNNNYNNYNYNNN 109
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 196 TSFANKMFHTHTIYNQQNAN 137
+S +NK H + YN N N
Sbjct: 83 SSLSNKTIHNNNNYNNNNYN 102
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.8 bits (44), Expect = 5.1
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 548 VTLKSLEKYLFFTLVGVDITLMVNM 474
+ L L KYL FT++ V +++++ +
Sbjct: 293 LALPLLGKYLLFTMILVGLSVVITI 317
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,960
Number of Sequences: 438
Number of extensions: 2471
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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