Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0612
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               152   2e-37
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                66   2e-11
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                51   6e-07
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         38   0.006
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     31   0.65 
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      31   0.65 
SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)          31   0.86 
SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               29   2.6  
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  29   2.6  
SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)                    28   4.6  
SB_25793| Best HMM Match : TP901-1_ORF40 (HMM E-Value=8.3)             28   6.1  
SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)              28   6.1  
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)                  27   8.0  
SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)                  27   8.0  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  152 bits (369), Expect = 2e-37
 Identities = 66/121 (54%), Positives = 86/121 (71%)
 Frame = +1

Query: 154 VQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFD 333
           + G I GL  G +GFH+H  GD + GCVS G HFNP  K+HG P+D NRHVGDLGNVV  
Sbjct: 30  ITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGNVVAG 89

Query: 334 ENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGNAGGRVACGVIG 513
           ++  + ID+ D  ++L G H ++GR+VV+H   DD G+  H DS+ TG+AGGR+ACGVIG
Sbjct: 90  DDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIG 149

Query: 514 I 516
           I
Sbjct: 150 I 150


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 30/70 (42%), Positives = 43/70 (61%)
 Frame = +1

Query: 301 HVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGN 480
           HVGDLGN++ ++N  +     D  + +     IIGRA+V+H   DD G+  H  S+ TGN
Sbjct: 1   HVGDLGNIIANQNGRATFRFEDKTVKV---WDIIGRAIVVHADEDDLGRGGHELSKSTGN 57

Query: 481 AGGRVACGVI 510
           +G RV CG+I
Sbjct: 58  SGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +1

Query: 274 HGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVV 417
           HG P D +RH+GDLGN+  D N  + + + D  +SL+G   IIGR++V
Sbjct: 2   HGAPEDKDRHLGDLGNIEADANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
 Frame = +1

Query: 85  AFLSTETIRGNITFTQVQ-DGKVHVQGGITGLPPGEYGFHVHE-----KGDLSGGC--VS 240
           A  S   IRG +TFTQ   +   +++  +TG+      + +H+     KG+ +  C  V+
Sbjct: 59  ATFSMSGIRGTVTFTQSSPNTSTNIKLALTGVNE-TLSWQIHDLPVIYKGNAATTCNTVA 117

Query: 241 TGSHFNPEHKDHGHPNDVNRH---VGDL-GNVVF-DENHYSRIDLVDDQISLSGPHGIIG 405
            G+ ++P+       +   +    VGDL G   F D N+ S +   D  + L+G HGI G
Sbjct: 118 LGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFG 176

Query: 406 RAVVL 420
           R +VL
Sbjct: 177 RTLVL 181


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = -2

Query: 487 RQRCRSSWSPDGHSCRNHQLSRGAPPPCR*YRADPIARSGRLPGRS 350
           RQRCRS   P       H LS+  PP  R   A P+    R   RS
Sbjct: 502 RQRCRSEGLPTSERAPRHYLSKRQPPVWRLDLAQPVGPPPRDSVRS 547


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
 Frame = +1

Query: 208 EKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDE---NHYSRIDLVD-DQI 375
           ++ DL     S   H N   +D GH ++    + D  N   DE   +H S  D++D + +
Sbjct: 204 QRSDLIHSSQSEAVHRNVHAEDEGHIDEYGCGLHD--NEQLDEEVASHVSGDDIMDVNDL 261

Query: 376 SLSGPHGIIGRAVVLHEKA--DDYGKSDHPDSRKTGNAGGRVA 498
             S     + R V   +K   D+YG   H D +  G A   V+
Sbjct: 262 IHSSQSEAVHRNVHAEDKGHIDEYGCGLHNDEQSDGEAASHVS 304


>SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)
          Length = 1003

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 97  TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 252
           +E +  N T     DG+V V+  +TG   G     + E+ DL+ G ++  SH
Sbjct: 395 SEILHFNYTIYMSPDGRVGVENPVTGNWDGVINELIQERADLAVGPITITSH 446


>SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 337 NHYSRIDLVDDQISLSGPHGIIG-RAVVLHEKADDYGKSDHP 459
           NH+S   L   + +L GP+   G R +++++K D Y K D P
Sbjct: 111 NHHSTGILKCQRANLKGPNLCAGKRRILIYDKYDKYDKYDFP 152


>SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 348

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 172 GLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDV 294
           GLPPG  G +V  +     G +  G+H + +H     PN+V
Sbjct: 307 GLPPGNPGQYVTPQ-PRHAGLLENGNHVSEQHNKQTPPNNV 346


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 61  SPRRPAAIAFLSTETIRGNITFTQVQDGKVHVQGGITGLPPG 186
           +P     +AF ST  + GN T   VQ G   V G I  L  G
Sbjct: 234 NPLETRNLAFFSTYALEGNATGVVVQTGDNTVMGRIANLASG 275


>SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +3

Query: 348 QDRPGRRPDLAIGSARYHRQGGGAPRES**LRQE*PSGLQEDRQRWRSSRLRCHRNSID 524
           +DRP RRP    G+    +Q    PR+   LR +      EDR+R +  R R HR+  D
Sbjct: 103 RDRPFRRPLPIQGAGEETKQDDVIPRDRTTLRDQRYRD-YEDRERHQRGRDRHHRDRDD 160


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 244 GSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQIS 378
           G+H N  H    HP++V+     L  V   +N  S +   D+Q S
Sbjct: 617 GNHLNTVHTPDNHPSNVHTPDNHLNTVHTPDNQPSTVHTPDNQPS 661


>SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)
          Length = 258

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 127 TQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVS 240
           T V +G +HVQ  +T +P G       E  D+  GC++
Sbjct: 58  TDVPEGSIHVQEEMTDVPKGSINVQ-EEITDVPEGCIN 94


>SB_25793| Best HMM Match : TP901-1_ORF40 (HMM E-Value=8.3)
          Length = 247

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 120 HIHSGSRWEGPRSGGHHWAASG*IRLPRP*EGRPKRR 230
           H +S ++W GP   GHH+  +    +    +G P R+
Sbjct: 52  HAYSHAKWTGPELSGHHFRKAPFSSVHTAPKGGPHRK 88


>SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)
          Length = 391

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/62 (37%), Positives = 27/62 (43%)
 Frame = +1

Query: 157 QGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDE 336
           Q G TG PPGEYG++    G   G     G H  P  K    P D N ++   G    D 
Sbjct: 91  QKGPTG-PPGEYGYNGF-PGSRHGQSGFPGLHGPPGPKG---PAD-NPYITTSGQQALDN 144

Query: 337 NH 342
           NH
Sbjct: 145 NH 146


>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
          Length = 1417

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 505 HRKRLDRQRCRSSWSPDGHSCRNHQ 431
           H +R+  Q C +   P+ HSCR+ Q
Sbjct: 605 HGERILEQECNTDPCPEAHSCRHIQ 629


>SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)
          Length = 419

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 199 HVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRID 357
           +V    DL  G +  G+H       HG+ ND+N  V    N  + E++  + D
Sbjct: 348 NVPSVADLPNGQLHHGNHNINGPLFHGNNNDLNGQVSQRNNYNYSEDYLHQCD 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,151
Number of Sequences: 59808
Number of extensions: 447598
Number of successful extensions: 1198
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)