Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0612
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 149 1e-36
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 147 5e-36
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 147 5e-36
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 142 2e-34
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 142 2e-34
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 142 2e-34
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 142 2e-34
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 128 3e-30
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 38 0.005
AC006695-16|AAK71874.1| 364|Caenorhabditis elegans Seven tm rec... 28 4.0
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 7.0
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ... 27 9.3
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut... 27 9.3
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical... 27 9.3
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 27 9.3
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 149 bits (361), Expect = 1e-36
Identities = 69/143 (48%), Positives = 92/143 (64%)
Frame = +1
Query: 91 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHK 270
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GC+S G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 271 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 450
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153
Query: 451 DHPDSRKTGNAGGRVACGVIGIL 519
S+ TGNAG R+ACG IGI+
Sbjct: 154 TSDQSKTTGNAGSRLACGTIGIV 176
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 147 bits (356), Expect = 5e-36
Identities = 68/141 (48%), Positives = 90/141 (63%)
Frame = +1
Query: 91 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHK 270
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GC+S G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 271 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 450
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153
Query: 451 DHPDSRKTGNAGGRVACGVIG 513
S+ TGNAG R+ACG IG
Sbjct: 154 TSDQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 147 bits (356), Expect = 5e-36
Identities = 68/141 (48%), Positives = 90/141 (63%)
Frame = +1
Query: 91 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHK 270
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GC+S G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 271 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 450
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153
Query: 451 DHPDSRKTGNAGGRVACGVIG 513
S+ TGNAG R+ACG IG
Sbjct: 154 TSDQSKTTGNAGSRLACGTIG 174
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 142 bits (344), Expect = 2e-34
Identities = 69/150 (46%), Positives = 94/150 (62%), Gaps = 4/150 (2%)
Frame = +1
Query: 79 AIAFLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHF 255
A+A L ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G HF
Sbjct: 5 AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 64
Query: 256 NPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKAD 435
NP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H D
Sbjct: 65 NPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQD 124
Query: 436 DYGK---SDHPDSRKTGNAGGRVACGVIGI 516
D G+ +S+KTGNAG R ACGVI +
Sbjct: 125 DLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 142 bits (344), Expect = 2e-34
Identities = 69/150 (46%), Positives = 94/150 (62%), Gaps = 4/150 (2%)
Frame = +1
Query: 79 AIAFLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHF 255
A+A L ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G HF
Sbjct: 5 AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 64
Query: 256 NPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKAD 435
NP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H D
Sbjct: 65 NPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQD 124
Query: 436 DYGK---SDHPDSRKTGNAGGRVACGVIGI 516
D G+ +S+KTGNAG R ACGVI +
Sbjct: 125 DLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 142 bits (344), Expect = 2e-34
Identities = 69/150 (46%), Positives = 94/150 (62%), Gaps = 4/150 (2%)
Frame = +1
Query: 79 AIAFLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHF 255
A+A L ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G HF
Sbjct: 5 AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 64
Query: 256 NPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKAD 435
NP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H D
Sbjct: 65 NPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQD 124
Query: 436 DYGK---SDHPDSRKTGNAGGRVACGVIGI 516
D G+ +S+KTGNAG R ACGVI +
Sbjct: 125 DLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 142 bits (344), Expect = 2e-34
Identities = 69/150 (46%), Positives = 94/150 (62%), Gaps = 4/150 (2%)
Frame = +1
Query: 79 AIAFLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHF 255
A+A L ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G HF
Sbjct: 27 AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 86
Query: 256 NPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKAD 435
NP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H D
Sbjct: 87 NPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQD 146
Query: 436 DYGK---SDHPDSRKTGNAGGRVACGVIGI 516
D G+ +S+KTGNAG R ACGVI +
Sbjct: 147 DLGEGVGDKAEESKKTGNAGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 128 bits (309), Expect = 3e-30
Identities = 65/150 (43%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Frame = +1
Query: 79 AIAFLSTETIRGNITFTQVQDGK-VHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHF 255
A+A L + G + TQ +G+ +G I GL PG +GFH+H+ GD + GC S G HF
Sbjct: 25 AVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHF 84
Query: 256 NPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKAD 435
NP +HG + V RHVGDLGNV + ++I D +SL G + +IGR++V+H D
Sbjct: 85 NPCKMNHGGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRD 144
Query: 436 DYGK---SDHPDSRKTGNAGGRVACGVIGI 516
D G+ +S KTGNAG R ACGVI +
Sbjct: 145 DLGQGIDDKAEESLKTGNAGARAACGVIAL 174
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 112 GNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFN 258
G TF+Q+ + + G + LP G + +H+ GD S GC G+ F+
Sbjct: 897 GRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 112 GNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFN 258
G TF+Q+ + + G + LP G + +H+ GD S GC G+ F+
Sbjct: 688 GRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736
>AC006695-16|AAK71874.1| 364|Caenorhabditis elegans Seven tm
receptor protein 206 protein.
Length = 364
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 455 WSLLP*SSAFSWSTTALPMIPCGPDSEIWSSTRSILL 345
W L+P + F W T AL I CGP + + R+ L+
Sbjct: 137 WMLMPIINGFIWGTVAL--ICCGPKDVLTNYIRNNLM 171
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 51 HHGFATPSRGHCLSIHRND*RQHHIHSGSRWEGPRSGGHH 170
HHG GH S H HH H G P GHH
Sbjct: 483 HHGEHGTHHGHHGSHHSP---AHHGHHGEHHHAPAHHGHH 519
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 51 HHGFATPSRGHCLSIHRND*RQHHIHSGSRWEGPRSGGHH 170
HHG GH S H HH H G P GHH
Sbjct: 541 HHGEHGTHHGHHGSHHSP---AHHGHHGEHHHAPAHHGHH 577
>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
protein.
Length = 1497
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 289 DVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 399
D N V DL + +F H+SR+D+V I +G+
Sbjct: 391 DDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 427
>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered
cuticle protein 3 protein.
Length = 1497
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 289 DVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 399
D N V DL + +F H+SR+D+V I +G+
Sbjct: 391 DDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 427
>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
protein F53G12.3 protein.
Length = 1503
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 289 DVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 399
D N V DL + +F H+SR+D+V I +G+
Sbjct: 401 DDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 437
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 181 PGEYGFHVHEKGDLSGGCVSTGSHFNP 261
PGE FH EK L C + G F P
Sbjct: 1019 PGEVAFHQDEKTQLPTTCTNEGFSFCP 1045
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,561
Number of Sequences: 27780
Number of extensions: 305075
Number of successful extensions: 733
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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