Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0612
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 170 6e-43
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 164 3e-41
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 160 5e-40
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 61 4e-10
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At2g32910.1 68415.m04035 expressed protein 31 0.40
At5g06020.1 68418.m00667 self-incompatibility protein-related si... 28 3.7
At3g23090.1 68416.m02911 expressed protein 28 3.7
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont... 28 5.0
At4g17410.1 68417.m02607 expressed protein 28 5.0
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic... 27 6.5
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r... 27 8.7
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 27 8.7
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 170 bits (413), Expect = 6e-43
Identities = 76/141 (53%), Positives = 95/141 (67%)
Frame = +1
Query: 94 STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKD 273
S+E + G I FTQ DG V G ++GL PG +GFHVH GD + GC+STG HFNP+ K
Sbjct: 10 SSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKT 69
Query: 274 HGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSD 453
HG P D NRH GDLGN+ ++ + + D QI L+GP+ I+GRAVV+H DD GK
Sbjct: 70 HGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGG 129
Query: 454 HPDSRKTGNAGGRVACGVIGI 516
H S TGNAGGRVACG+IG+
Sbjct: 130 HELSLATGNAGGRVACGIIGL 150
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 164 bits (399), Expect = 3e-41
Identities = 75/158 (47%), Positives = 98/158 (62%)
Frame = +1
Query: 43 RRLIMASPRRPAAIAFLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDL 222
+ L + S + A T + G +T TQ G V ITGL PG +GFH+HE GD
Sbjct: 56 KALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDT 115
Query: 223 SGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGII 402
+ GC+STG HFNP + HG P D RH GDLGN+ + + + +VD+QI L+GP+ ++
Sbjct: 116 TNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVV 175
Query: 403 GRAVVLHEKADDYGKSDHPDSRKTGNAGGRVACGVIGI 516
GRA V+HE DD GK H S TGNAGGR+ACGVIG+
Sbjct: 176 GRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 160 bits (389), Expect = 5e-40
Identities = 75/156 (48%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Frame = +1
Query: 55 MASPR-RPAAIAFLSTET-IRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSG 228
M +PR A+A ++ + +RG + F Q G HV G I+GL PG +GFH+H GD +
Sbjct: 1 MEAPRGNLRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTN 60
Query: 229 GCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGR 408
GC+STG HFNP ++ HG PN+ RH GDLGN++ N + I + D I LSG + I+GR
Sbjct: 61 GCISTGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGR 120
Query: 409 AVVLHEKADDYGKSDHPDSRKTGNAGGRVACGVIGI 516
AVV+H DD GK H S+ TGNAG RV CG+IG+
Sbjct: 121 AVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 61.3 bits (142), Expect = 4e-10
Identities = 40/121 (33%), Positives = 62/121 (51%)
Frame = +1
Query: 76 AAIAFLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHF 255
AA+A I G + F QV ++ TGL PG + + ++E GDL+ G STGS +
Sbjct: 97 AAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLY 156
Query: 256 NPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKAD 435
NP G +GDLG + D+N + +++ ++ +IGRAVV++ K D
Sbjct: 157 NPFQDQTG-----TEPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVY-KTD 207
Query: 436 D 438
D
Sbjct: 208 D 208
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Frame = +1
Query: 142 GKVHVQGGITGLPPGEYGFHVHEKGDLS--GGCVSTG---SHFNPEHKDHGHPNDVNRHV 306
G V + GL P + H H D + G S G NP H H H + RH
Sbjct: 139 GNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAASGGFPHGFSNPFHGGHSHMHSYQRHT 198
Query: 307 GDLGNVVFDENHYSRIDLV 363
G G ++H+ RI L+
Sbjct: 199 GRQG----QQDHHLRILLL 213
>At2g32910.1 68415.m04035 expressed protein
Length = 691
Score = 31.5 bits (68), Expect = 0.40
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -2
Query: 502 RKRLDRQRCRSSWSPDGHSCRNHQLSRGAPPPCR 401
RKR DR R S GH R H+ R +PPP R
Sbjct: 465 RKRSDRDRYAPG-SSRGHPTRKHERRRASPPPRR 497
>At5g06020.1 68418.m00667 self-incompatibility protein-related
similar to self-incompatibility [Papaver rhoeas]
GI:3097260
Length = 151
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 106 IRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSG 228
IRG +T V++ ++ G + GFH+H++G+L G
Sbjct: 42 IRGPLTRITVKNNNDYLLGIHCKSKDDDLGFHIHKEGELYG 82
>At3g23090.1 68416.m02911 expressed protein
Length = 338
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 8 ASTHIPGCDRSGDGSSWLRHAVPRPLPFYPQKRLEAT 118
+S H +SG G++ R+ VP+P +KR +T
Sbjct: 86 SSLHAKHASKSGRGNNKTRNTVPQPFSLATEKRASST 122
>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1501
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +2
Query: 20 IPGCDRSGDGSSWLRHAVPRPLPFYPQKRLEATSHSLRFKMGR 148
+PG + G +R ++PR ++P ++ T R K+ R
Sbjct: 679 LPGGKETQSGHVGVRPSIPRKFQYHPMGNIDVTDEPCRGKVSR 721
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 112 GNITFTQVQDGKVHVQGGITGLPPGEYGFH 201
GN F Q G VQ G G+ PG GFH
Sbjct: 415 GNQYFNGFQPGFNGVQHGFNGVQPGFNGFH 444
>At2g37980.1 68415.m04662 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 638
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +1
Query: 61 SPRRPAAIAFLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVS 240
S R + + +T T+ I+ + DG+ +QGG P S G S
Sbjct: 33 SERPSISSDYCNTNTVNIAIS-PDIDDGETGLQGGACSSPS-------------SIGSSS 78
Query: 241 TGSHFNPEHKDHGHP 285
+GSH++ +H H HP
Sbjct: 79 SGSHYHHDHHYHHHP 93
>At3g54430.1 68416.m06021 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 183
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 553 NKTIQ*EICRSIEFR*HRKRLDRQRCRSSWSPDGHSCRNHQLSRGAPPPCR*YRADPIAR 374
N T+ ++CR R +K +RCR+ G++C H S P + P R
Sbjct: 33 NNTVGEKVCRDCGNR-AKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRSSSSPSER 91
Query: 373 SGRL 362
+L
Sbjct: 92 KKKL 95
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 292 VNRHVGDLGNVVFDENHYSRIDLVDDQISLSGP 390
V R GDL + V DEN+ R L+D +S + P
Sbjct: 962 VERMDGDLWDKVLDENNDYRRQLIDQVVSTALP 994
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,610
Number of Sequences: 28952
Number of extensions: 297360
Number of successful extensions: 832
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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