Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0610
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.3  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    25   8.3  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 484 PGQCPFDDACRISLNLIVVRTFSFYFQNRPTCRINVHSKISTGDSF 347
           P   P ++     L L +VRTF F  Q R    I  H K    D++
Sbjct: 734 PWNSPSNNYTESDLELGIVRTFEFVSQLRRMAVIVKHGKFKKMDAY 779


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 497  THLENTIRYQCDNTPIEKQCN 559
            T LENT++Y C+   I+K  N
Sbjct: 1198 TKLENTVKYLCEYDSIDKVRN 1218


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 361  CLFSNGH*YDRLVYFGN 411
            CL SNGH Y +LV  GN
Sbjct: 2467 CLGSNGHTYKQLVKGGN 2483


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 373 SKISTGDSFRDHGEVVALTPIFNVISCFLRIKY 275
           S +S   SF  HG+   L P +  ISCF    Y
Sbjct: 65  SFLSLSVSFITHGDNAYLLPAWIAISCFQTAAY 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,165
Number of Sequences: 5004
Number of extensions: 47928
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)