Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0610
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119...    32   0.30 
12_01_1079 - 11223247-11223336,11223606-11223717,11224743-112248...    31   0.92 
07_01_1191 - 11306151-11307044                                         28   6.5  
11_01_0649 - 5259038-5259195,5259824-5259887,5260446-5260512,526...    27   8.5  

>01_06_1338 +
           36411536-36411646,36411738-36411791,36411898-36411974,
           36412108-36412195,36412289-36412561,36412651-36412968
          Length = 306

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 314 WGQSNDLAVIPKGVARAYFRMDIDTTGWSILE 409
           WG     +V+PK V+ A  + ++D  GWSI E
Sbjct: 236 WGLQQGQSVLPKSVSEARLKENMDLFGWSIPE 267


>12_01_1079 -
           11223247-11223336,11223606-11223717,11224743-11224825,
           11226061-11226173,11226261-11226337,11228626-11228719,
           11229072-11229160,11230485-11230560,11231637-11231808
          Length = 301

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 377 DIDTTGWSILEIETEGSYHDEIQAYAAGIVEGALTWYLIHTHLENTIRYQCDNTPIEKQC 556
           D +T  + +L+ E  G   +  Q Y   I  G   W+L+  +  N IRY C +T +    
Sbjct: 230 DKETKEYEVLD-EEPGDDEESAQKYE--ISPGLSFWFLVCFYYNNQIRY-CHDTSVRSPM 285

Query: 557 NKL 565
           N+L
Sbjct: 286 NRL 288


>07_01_1191 - 11306151-11307044
          Length = 297

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 478 QCPFDDAC-RISLNLIVVRTFSFYFQNRPTCRINVHSKISTGDSFR 344
           QCPF DAC   +LN  +       F N P C+ +  S  +  D+++
Sbjct: 183 QCPFPDACIGDALNTGLFDYVWVQFYNNPPCQYSSGSTSNLADAWK 228


>11_01_0649 -
           5259038-5259195,5259824-5259887,5260446-5260512,
           5260534-5260607,5260725-5261510,5262623-5262685
          Length = 403

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 475 CPFDDACRISLNLIVVRTFSFYFQNRPTCRINVHSKISTG-DSFRDHGEVVALTPIFNVI 299
           C FD A   S +   +   + YF      RI + S +S   D F  HG    L  + +++
Sbjct: 168 CKFDCAKISSSSAKRLSITNSYFSETSRIRIAIPSLVSLKLDDF--HGRTPVLEWMPSLV 225

Query: 298 SCFLRIKYC 272
             F+R+ YC
Sbjct: 226 DAFVRVLYC 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,505,142
Number of Sequences: 37544
Number of extensions: 282606
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)