Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0610
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43321| Best HMM Match : Laminin_A (HMM E-Value=0.76)                50   1e-06
SB_32981| Best HMM Match : Laminin_A (HMM E-Value=6.6e-25)             27   8.6  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_43321| Best HMM Match : Laminin_A (HMM E-Value=0.76)
          Length = 353

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
 Frame = +2

Query: 269 ATVFYSEKTGYHIEYWGQSNDLAVIPKGVARAYFRMDIDTTGWSILEIETEGSYH---DE 439
           ATV+Y+   GY I++      +    KGVA   ++ +I+TTGW++L++ +        D 
Sbjct: 23  ATVYYNRGHGYSIKF-----GVVDTQKGVAYGLYQDNINTTGWAVLDVVSGTGVEPVDDV 77

Query: 440 IQAYAAGIVEGALTWYLIHTHLENT--IRYQCDNTPI 544
              YAAG +EGALT   I+   EN   I ++ D+ P+
Sbjct: 78  ALMYAAGYLEGALTARHINYQYENVFGIFFKSDDDPL 114


>SB_32981| Best HMM Match : Laminin_A (HMM E-Value=6.6e-25)
          Length = 432

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 428 YHDEIQAYAAGIVEGALTWYLIHTHLENT--IRYQCDNTPIEKQCNK 562
           Y+D++  +AAG +EGALT   I+ +  N   + ++ ++ P+  +  K
Sbjct: 46  YNDDVIMHAAGYLEGALTASQINDNYANLYGVFFKSEDDPMVAKVEK 92


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 472 PFDDACRISLNLIVVR-TFSFYFQNRPTCRIN 380
           P    CR+   L++    FS YF +RP+ RIN
Sbjct: 781 PRSIVCRLQKGLVLASWVFSGYFASRPSTRIN 812


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,268,997
Number of Sequences: 59808
Number of extensions: 342043
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)