Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0610
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    30   0.015
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    26   0.24 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.1  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 168 RKLVLTSSVYLVY*LSWRFLRDRWKEVKRTVTTQPQYFIRRKQDITLNIGVKATTSP*SL 347
           R L+ T +VY+    S     +  K+V  ++       +  +   TLN G++    P  +
Sbjct: 94  RDLIWTPTVYVSNEPSSAITGNNVKDVLVSIDPSGMVRLNTRLQATLNCGLRLEKFPFDV 153

Query: 348 KESPVLIFEWT-LIRQVGLFW 407
           +E P++   WT  +  + L+W
Sbjct: 154 QECPLIFESWTHNVLDMVLYW 174


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 367 ISTGDSFRDHGEVVALTPIFNVISCFL 287
           ISTG  +R+H +++A T   NV+  F+
Sbjct: 128 ISTGQKWRNHRKLIAPTFHLNVLKSFI 154


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 445 SLCGRHRRRGTDLVLNSH 498
           SLCGRH +R  + +L+S+
Sbjct: 49  SLCGRHEKRLLNELLSSY 66


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 445 SLCGRHRRRGTDLVLNSH 498
           SLCGRH +R  + +L+S+
Sbjct: 49  SLCGRHEKRLLNELLSSY 66


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 497 CELSTRSVPLRRCLPHKLESHRG 429
           CEL++ S+PL+  L   +++  G
Sbjct: 799 CELTSESMPLQSALTAAVQTSVG 821


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 497 CELSTRSVPLRRCLPHKLESHRG 429
           CEL++ S+PL+  L   +++  G
Sbjct: 889 CELTSESMPLQSALTAAVQTSVG 911


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,330
Number of Sequences: 438
Number of extensions: 2998
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)