Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0610
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36280.1 68414.m04509 adenylosuccinate lyase, putative / aden...    28   5.4  
At3g53880.1 68416.m05952 aldo/keto reductase family protein simi...    27   9.4  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    27   9.4  

>At1g36280.1 68414.m04509 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 527

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +2

Query: 311 YWGQSNDLAVIPKGVARAYFRMDIDTTGW-----SILEIETEGSYHDEIQAYAAGIVEG 472
           YWG+  DLA         YFR+ ++   W     +I ++    S+  E   Y  GI++G
Sbjct: 80  YWGKVKDLASSMSEFGLIYFRVLVEIK-WLIKLSNIPQVTEVPSFSKEAHKYLQGIIDG 137


>At3g53880.1 68416.m05952 aldo/keto reductase family protein similar
           to chalcone reductase [Sesbania rostrata][GI:2792155],
           and aldose reductase ALDRXV4 [Xerophyta
           viscosa][GI:4539944], [Hordeum vulgare][GI:728592]
          Length = 315

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 314 WGQSNDLAVIPKGVARAYFRMDIDTTGWSI 403
           WG     +++PK       R + D  GWSI
Sbjct: 245 WGLQMGHSILPKSTNEGRIRENFDVLGWSI 274


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -1

Query: 320 DPNIQCDILFSPNKILWLR---SYRPLDFFPS 234
           D N     LF PN+I W R   +Y P  F+PS
Sbjct: 123 DSNKAEGFLFDPNEIRWYRLSFAYIPSGFYPS 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,006
Number of Sequences: 28952
Number of extensions: 241860
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)