Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0609
         (517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;...    50   4e-05
UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Re...    36   0.72 
UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae ...    33   3.9  
UniRef50_P0C211 Cluster: Gag-Pro-Pol polyprotein (Pr160Gag-Pro-P...    32   6.8  
UniRef50_UPI00006CB34C Cluster: CTP synthase family protein; n=1...    32   8.9  

>UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 133

 Score = 49.6 bits (113), Expect = 4e-05
 Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
 Frame = +2

Query: 275 MAFMMPVVKNDWDIYNSQXXXXXXXXXXKAGFNVGGRVRKISE-SRSEGPAL--SPRSAG 445
           MAFMMPV+KN+WDIY +                   R RK+SE S+SEGP+L  SP S  
Sbjct: 1   MAFMMPVMKNEWDIYKTNRSRRSSECSNPQAC----RSRKVSECSKSEGPSLSTSPGSDF 56

Query: 446 L-SP-HRSAPAMRSLSYCRALTRESR 517
           L SP HRS P + S  + R  +R S+
Sbjct: 57  LTSPAHRSVP-LTSRHFSRTSSRASQ 81


>UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Rep:
           Blr1443 protein - Bradyrhizobium japonicum
          Length = 275

 Score = 35.5 bits (78), Expect = 0.72
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 334 GPLRVVYVPIVLHYWHHERHLGEGGGDSFVGTF 236
           GP + V    V H WHH   L EGG  +F GTF
Sbjct: 202 GPFKYVLATPVFHRWHH-TSLEEGGDTNFAGTF 233


>UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae pv.
           oryzae|Rep: Hemagglutinin - Xanthomonas oryzae pv.
           oryzae
          Length = 998

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 354 RRRRGSTWEAGCGKYRSHGPKARRCH 431
           R R G    AG G+YR H P+ R CH
Sbjct: 750 RGRCGGCGTAGLGRYRHHHPRGRHCH 775


>UniRef50_P0C211 Cluster: Gag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol)
            [Contains: Matrix protein p19 (MA); Capsid protein p24
            (CA); Nucleocapsid protein p15-pro (NC- pro) (NC');
            Protease (EC 3.4.23.-) (PR); p1; Reverse
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7)
            (EC 3.1.26.4) (RT); Integrase (IN)]; n=233; root|Rep:
            Gag-Pro-Pol polyprotein (Pr160Gag-Pro-Pol) [Contains:
            Matrix protein p19 (MA); Capsid protein p24 (CA);
            Nucleocapsid protein p15-pro (NC- pro) (NC'); Protease
            (EC 3.4.23.-) (PR); p1; Reverse
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7)
            (EC 3.1.26.4) (RT); Integrase (IN)] - Human T-cell
            leukemia virus 1 (isolate Melanesia mel5 subtype
            C)(HTLV-1)
          Length = 1462

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 313  VPIVLHYWHHERHLGEGGGDSFVGTFLEKLPPLRRNKICSRKLTLRSIMI 164
            VPI+LH+ H  ++LG   G+ +  TFL+   PL   K  +   TL  I+I
Sbjct: 983  VPILLHHSHRFKNLGAQTGELW-NTFLKTAAPLAPVKALTPVFTLSPIII 1031


>UniRef50_UPI00006CB34C Cluster: CTP synthase family protein; n=1;
           Tetrahymena thermophila SB210|Rep: CTP synthase family
           protein - Tetrahymena thermophila SB210
          Length = 608

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 72  LIQENSSLTYKFLQKPEIFLKYRH 143
           +I + SSL YK  QK EIF ++RH
Sbjct: 483 IISDKSSLAYKMYQKSEIFERHRH 506


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,222,529
Number of Sequences: 1657284
Number of extensions: 8629222
Number of successful extensions: 25265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25254
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)