Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0609
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   2.9  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   2.9  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    26   3.8  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   6.7  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   8.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   8.9  

>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 229 KLPPLRRNKICSRKLTLRSIMILI---FFFTECLYFRKIS 119
           +L P  +N + +     +S+ +L+   F F  CL+FRK S
Sbjct: 104 RLRPFAKNGVTNGVKLAQSLFLLLPFNFIFFACLFFRKAS 143


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -2

Query: 438 DRGDNAGPSDRDSDIF------RTLPPTLNPAFSADSEARRDL*ELYMSQSFF 298
           D    A P  +DS +F       ++P  +NPA++   +    L E Y+S  FF
Sbjct: 115 DTYSTAIPFSKDSSVFDAVGQQSSVPIHINPAYTNSHQNSYSLNETYLSYDFF 167


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 160 IFFFTECLYFRKISGFCRNL*VKLEFSWINPSITV*AAAFTSMSHSLNRL 11
           ++FFT CL F K+ G   NL + ++ S +     + +AA   +S  L +L
Sbjct: 55  VYFFTPCLVFEKV-GNGLNLKMLIDLSLLPVFYVIISAASILISFLLAKL 103


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = +3

Query: 357 RRRGSTWEAG--CGKYRS--HGPKARR-CHHDRQ 443
           +R GS   A   C +YRS  HGP+ RR   HD Q
Sbjct: 37  QRHGSRASADEFCEQYRSRSHGPQGRRSLEHDNQ 70


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 254 LFCWNVFREIASVETK 207
           L+CW ++ E+ SV +K
Sbjct: 53  LYCWYIYSEVPSVSSK 68


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 169 MILIFFFTECLYFRKI-SGFCRNL*VKLEFSW 77
           MI +  F  CL F  + +GFC    +K + SW
Sbjct: 289 MIGLGIFNFCLAFVSVVAGFCTRQRIKFKVSW 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,284
Number of Sequences: 5004
Number of extensions: 35617
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)