Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0609
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    28   3.9  
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567...    27   6.8  
11_04_0191 - 14692104-14692484                                         27   8.9  
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405...    27   8.9  

>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 253 SFVGTFLEKLPPLRRNKICSRKLTLRSIMILIFFFTECLY-FRKIS 119
           S  GTF    P +  +K C+RK+ + S  ++++  T CL  F+ +S
Sbjct: 204 SKAGTFRWMAPEMIHDKRCNRKVDVYSFGLVLWELTTCLVPFQNLS 249


>12_01_0667 +
           5674322-5674393,5674455-5675159,5676051-5676087,
           5676238-5676335,5676452-5676475
          Length = 311

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = -1

Query: 331 PLRVVYVPIV-LHYWHHERHLGEGGGDSFVGTFLEKLPPLRRNKICSRKLTLRSIMILIF 155
           P+     P + LH+ HH  H G GGG    G  +    P    +     + + S      
Sbjct: 30  PMHAAASPYLGLHHDHHHHHGGGGGGGGMNGRHMSPPTPPAAAEESKAVVVVSSSATAAA 89

Query: 154 FFTECL 137
            + ECL
Sbjct: 90  RYRECL 95


>11_04_0191 - 14692104-14692484
          Length = 126

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 342 PQNRRRRRGS-TWEAGCGKYRSHGPKAR 422
           P  RRRRR S T   GCGK R    ++R
Sbjct: 4   PARRRRRRSSVTAHGGCGKQRWRQRRSR 31


>04_04_0415 +
           25038826-25038835,25039333-25039964,25040484-25040561,
           25040588-25040833,25041598-25041684,25041860-25042024
          Length = 405

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 517 ARLASEGATVRQRAH-RRSAAVRTEPCRSW 431
           AR +S   T  +R+H RR+A   +E CRSW
Sbjct: 55  ARQSSSEQTRERRSHLRRNALQVSERCRSW 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,751,896
Number of Sequences: 37544
Number of extensions: 244221
Number of successful extensions: 837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)