Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0609
         (517 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal...    31   3.2  
AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.      31   3.2  
AK126969-1|BAC86769.1|  245|Homo sapiens protein ( Homo sapiens ...    29   7.3  

>BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal
           protein S18C protein.
          Length = 142

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 220 PLRRNKICSRKLTLRSIMILIFF---FTECLYFRKISGFC 110
           PL++  +C + +  +++ +L  F   FT C+Y R I+G C
Sbjct: 61  PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLC 100


>AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.
          Length = 142

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 220 PLRRNKICSRKLTLRSIMILIFF---FTECLYFRKISGFC 110
           PL++  +C + +  +++ +L  F   FT C+Y R I+G C
Sbjct: 61  PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLC 100


>AK126969-1|BAC86769.1|  245|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45022 fis, clone BRAWH3016715. ).
          Length = 245

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 300 RTIGTYTTLKGPVEPQNRRRRRGSTWEAGCGKY-RSHGPKARRCH 431
           R  G +TTL GP+  Q    R G  W A    + R H P    CH
Sbjct: 58  RAWGRHTTLLGPLGLQGPGCRPGCWWLASMATHGRLHAPYLLLCH 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,412,845
Number of Sequences: 237096
Number of extensions: 1235437
Number of successful extensions: 3562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3562
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)