Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0608
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    29   0.66 
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    26   4.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.7  

>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 325 RKIFFLNLKGFIPYKSTKNCKLIIVFIYFKVD 420
           R I FLNL  FIP K+TK+ + +   I + ++
Sbjct: 116 RAIVFLNLHNFIPPKNTKDMEELKALILYAME 147


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 304 FHITRSPRKIFFLNLKGFIPYKSTK 378
           FH  R+P +IF   ++G +P+K+T+
Sbjct: 72  FHF-RAPSRIFTKAVRGMLPHKTTR 95


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 271 SPYKAPTADQEFHITRSPRKIFFLNLKGFI 360
           SP+KA   D++  I        FLNLK F+
Sbjct: 748 SPFKADENDEDIFIISLYHSSLFLNLKFFV 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,084
Number of Sequences: 5004
Number of extensions: 39493
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)