Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0607
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    36   0.004
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   1.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   5.3  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   7.1  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.3  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    25   9.3  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   9.3  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 26/94 (27%), Positives = 48/94 (51%)
 Frame = +3

Query: 345  VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 524
            ++ K +  ++ +G+  S   V+  +E + V T  + + Y  LTD S+E      ENK  L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501

Query: 525  LVINKLLEPINVADSHWKQKTDQVVIFLAKSNPN 626
            L+I+   + +++  S +K K   ++ F  KS  N
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNKSFQN 3535


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 513 KDYLLVINKLLEPINVADSHWKQ 581
           ++YLL+   +  P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +3

Query: 345  VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 524
            +QK Y+       WD+SDK V  ++E  N   L K     K T  S  L    L   D  
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251

Query: 525  LVINKLLEPINVADSHWKQK 584
             +I+ L + +   D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 498 DNLENKDYLLVINKLL 545
           DNLEN DY+L +  LL
Sbjct: 569 DNLENDDYVLALRDLL 584


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 278 KRKGNFDAHGSITNTHNKYISSS 346
           K+K +FD H S+T+ H + +SS+
Sbjct: 99  KKKDSFD-HASVTSLHRRSLSSN 120


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 525 ASNLYFPDCPHAAPLIYLSIYNIPVPLV 442
           A   YF DC HA  +  +  YN  V +V
Sbjct: 268 AEQTYFQDCMHAVTVDLMRKYNKEVAIV 295


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 444 PKEQVYCKLTDKSMELHVDNLENKDYLLV 530
           PK+  +C+L +  +  H++ L++K + L+
Sbjct: 331 PKQSDFCQLRNFLLYTHIEGLKHKTHKLI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,345
Number of Sequences: 5004
Number of extensions: 51162
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)