Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0607
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059...    42   6e-04
08_02_0822 + 21549257-21550729,21550776-21550877                       31   1.0  
07_03_0674 + 20598668-20598774,20599456-20600467                       30   1.4  
08_02_0318 + 15710834-15711775                                         29   4.2  
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...    27   9.7  

>01_06_0764 -
           31804811-31804915,31805013-31805072,31805720-31805959,
           31807367-31807525,31807653-31807769
          Length = 226

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
 Frame = +3

Query: 162 EIRSDIEEINDLLKQAKRKKVQDLLSLEIRXXXXXXXXXXXXXXXXPMEV-SPIPTTSTS 338
           E+R D+EE+  L   AKR +V   L+ EIR                 +   SP    + +
Sbjct: 5   ELRLDLEELRRLEGLAKRPRVLSALANEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAA 64

Query: 339 APVQKK----YQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNL 506
           AP          V L  + WDQ  + +K++V L+ V    +++V       S++    ++
Sbjct: 65  APAPAAAAGVSYVTLGSFSWDQDAEKIKIYVFLEGVE---QDKVETTFKPMSVDTKFHDV 121

Query: 507 ENKDYLLVINKLLEPINVADSHWKQKTDQVVIFLAKSN 620
           + K+Y   I KL + I         K  ++++ L K++
Sbjct: 122 KGKNYRCAIPKLHKEIVPEKCKVLVKPTKIIVTLYKAS 159


>08_02_0822 + 21549257-21550729,21550776-21550877
          Length = 524

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/41 (26%), Positives = 28/41 (68%)
 Frame = +3

Query: 471 TDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDQ 593
           ++K +E++ D  +NK+ ++++ ++ E +N+ +SH +  T Q
Sbjct: 438 SEKMVEMN-DTRKNKEQIIMLKEVYEQLNMIESHMRPSTSQ 477


>07_03_0674 + 20598668-20598774,20599456-20600467
          Length = 372

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 300 PMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV-ELKNVHTLPKEQVYCKLTD 476
           P +VSP P      P++K  + K ++Y       FVK  + ++ N H    E ++ +L+ 
Sbjct: 220 PPQVSPTPAIDVLLPIEKAQKAKRDIYA---VSYFVKAGLGKVLNPHKERMENLFKRLSP 276

Query: 477 KSMELHV 497
            + EL+V
Sbjct: 277 WAPELYV 283


>08_02_0318 + 15710834-15711775
          Length = 313

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 333 YLLWVLVILPWASKFPFLLMLLVLSQVF*SPRRVNPVLSYV 211
           Y L  LV++P     P  ++ L LS V+ +PRR +PV +++
Sbjct: 228 YALAALVVVP----LPVQVVALALSSVWETPRRTSPVAAFL 264


>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +3

Query: 300 PMEVSPIPTTSTSAPVQKKYQVK-LNVYGWDQSDKFVK---VFVELKNVHTLPKEQVYCK 467
           P  ++ +    +  P   K QVK LN  G + + + +    VF+ELKN   L +   +C+
Sbjct: 467 PSYLAKVQWDESFGPKMDKLQVKGLNHGGIESAKQALNESGVFLELKNALNLWRPLTFCR 526

Query: 468 LT 473
           LT
Sbjct: 527 LT 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,133
Number of Sequences: 37544
Number of extensions: 277868
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)