Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0607
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)                   85   6e-17
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)               30   1.4  
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_10788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)         28   7.5  

>SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)
          Length = 227

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
 Frame = +3

Query: 156 IQEIRSDIEEINDLLKQAKRKKVQDLLSLEI---RXXXXXXXXXXXXXXXXPMEVSPIPT 326
           ++E++ D +E+   + ++ R +V+++L  E+                    P   +    
Sbjct: 4   LEELKQDCDELRAFIAESSRARVKEVLQRELIKLEQEVSLLSREKPASTDQPNATAEEKP 63

Query: 327 TSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNL 506
           +S+       Y  K+  YGWDQSDKFVK+++ L  V T+PKE +     D+S+E+ V  L
Sbjct: 64  SSSKPVTVSSYTKKITSYGWDQSDKFVKIYITLPEVETVPKESLVPNFGDRSVEVTVKGL 123

Query: 507 ENKDYLLVINKLLEPINVADSHWKQKTDQVVIFLAKSNPNTTW 635
           +  +Y L I +L   I  + S+ K K+  + +FL K      W
Sbjct: 124 KGVNYQLQICRLYSSIVPSTSYLKAKSGTLTVFLKKEKMGEKW 166


>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
          Length = 1002

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 99  KDLHSIQTNCSFIKMSEAKIQEIRSDIEEINDLLKQAKRKKVQDLLSLEI 248
           K+LH      S ++  E  IQ +R   EE+ ++L+Q  +++    LS+ +
Sbjct: 625 KNLHVYDMLVSLVEAEEKCIQRVRLSEEEVKEILQQRIKEEAAPQLSVSV 674


>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/87 (28%), Positives = 35/87 (40%)
 Frame = +3

Query: 378 YGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLVINKLLEPIN 557
           Y W QS   V V   L     L  E + C +    +E+ + + E K   L+  KL   + 
Sbjct: 246 YTWSQSGDNVTVTFSLPTNTNL--EDIQCTIKPAHIEVKLSS-EKK---LLQGKLYAKVK 299

Query: 558 VADSHWKQKTDQVVIFLAKSNPNTTWS 638
             DS W    + + I L K  P   WS
Sbjct: 300 PDDSTWTVVDNSLEIVLDKVVPEHHWS 326


>SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 990

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 351 KKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENK 515
           K  Q+K  V+ W   D+ ++  +++  V  +  E+V C  T+    +HV  L+ +
Sbjct: 207 KTSQLKYVVFDWTWRDQKLRSLMDIPEVKAVKIERVLCLKTNLKHAVHVAVLQKE 261


>SB_10788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 441 LPKEQVYCKLTDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDQVVIFLAK 614
           LP+    C  T    +LH+D LE ++  L+      P+  A    ++KT     F AK
Sbjct: 5   LPEGMTNCAGTASPFDLHIDELEPEEITLLSKP--TPVVRASGITRKKTQNYAGFFAK 60


>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
          Length = 916

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 513 YFPDCPHAAPLIYLSIYNIPVPLVVYEHSL 424
           Y P  P+A+ L    +Y +PVP V Y  +L
Sbjct: 790 YIPYVPYASTLCQYPMYPMPVPYVPYASTL 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,326,291
Number of Sequences: 59808
Number of extensions: 353365
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)