Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0605
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   168   4e-43
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   166   2e-42
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    38   0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.41 
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   1.7  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   3.8  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   5.1  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   6.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   6.7  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    25   6.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.9  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  168 bits (409), Expect = 4e-43
 Identities = 88/141 (62%), Positives = 107/141 (75%)
 Frame = +2

Query: 95  AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 274
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     + LPH+AGR+ 
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 275 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAII 454
            KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ 
Sbjct: 57  TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116

Query: 455 NSGPREDSTRIGRAGTVRRQA 517
             GPREDSTRIG AGTVRRQA
Sbjct: 117 ACGPREDSTRIGSAGTVRRQA 137


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  166 bits (403), Expect = 2e-42
 Identities = 88/137 (64%), Positives = 103/137 (75%), Gaps = 3/137 (2%)
 Frame = +2

Query: 116 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 286
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRF
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60

Query: 287 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 466
           RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GP
Sbjct: 61  RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120

Query: 467 REDSTRIGRAGTVRRQA 517
           REDSTRIG AGTVRRQA
Sbjct: 121 REDSTRIGSAGTVRRQA 137


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +2

Query: 308 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 466
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 367 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 465
           G TYC  C     L+NW K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 131 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 274
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 316 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 438
           PYK+   +  + W +  G+TY  + +  + L   R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 293 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 132
           L  N C+    LNE ++ + SL R   P++    ++ R +S+ +K+   E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 120 CLYHKPPTFLKSSFS 164
           C  H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 266 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 406
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   RLLTVRGYNFYLVIEKYQSWPRRTGSDDV 88
           R + +RG+N  L +  Y+SW +     D+
Sbjct: 121 RQMAIRGFNPSLNVNPYESWAKILDCGDI 149


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 395  EIIHLLTGENPLQVLVTAIINSGPREDSTR 484
            EI  +LTGENP ++   AI+    R  + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,253
Number of Sequences: 5004
Number of extensions: 46158
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)