Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0605
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               235   1e-62
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   4.0  
SB_23234| Best HMM Match : U-box (HMM E-Value=0.0064)                  27   9.2  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     27   9.2  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  235 bits (576), Expect = 1e-62
 Identities = 110/138 (79%), Positives = 124/138 (89%)
 Frame = +2

Query: 104 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 283
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128

Query: 284 FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 463
           FRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSG
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188

Query: 464 PREDSTRIGRAGTVRRQA 517
           PREDSTRIGRAGTVRRQA
Sbjct: 189 PREDSTRIGRAGTVRRQA 206



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +2

Query: 104 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 208
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 143 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 274
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_23234| Best HMM Match : U-box (HMM E-Value=0.0064)
          Length = 349

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 178 ATPSAEKLDFRNVGGLW*RHGFHNHA--ACLGYVVTSSSPR 62
           +TPS EKL  R    LW    F   A  AC G  +TS + R
Sbjct: 212 STPSVEKLPLRVETFLWCTEAFKEKAASACAGQPLTSPTYR 252


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 167 RWSCYDVQVSDMSLQDYISVKEKYAKYLP 253
           RWSC   Q  + +++ Y+  KE  ++ LP
Sbjct: 59  RWSCVTYQAKNQAVECYLPGKEPGSRVLP 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,341,236
Number of Sequences: 59808
Number of extensions: 366830
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)