Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0604
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 103 8e-24
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 29 0.29
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 0.51
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 1.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 1.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 1.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 1.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 1.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 1.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 2.0
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 2.0
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 3.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 3.6
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 3.6
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 3.6
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 4.7
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 4.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.7
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 24 8.2
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 24 8.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 24 8.2
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 24 8.2
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 103 bits (248), Expect = 8e-24
Identities = 44/82 (53%), Positives = 62/82 (75%)
Frame = +2
Query: 167 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 346
S ++LK L E IP++Q +I++FR +HG +GEVT++ MYGG RG++ L+WE SVLD
Sbjct: 36 STRSSSLKDRLAELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLD 95
Query: 347 ADEGIRFRGLSIPECQQQLPKA 412
+EGIRFRG +IPECQ+ LP +
Sbjct: 96 PNEGIRFRGYTIPECQKLLPSS 117
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 29.1 bits (62), Expect = 0.29
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 257 NHASFGIRGSSLVPWESFPGEYFLNSSVQRLDLEVELSQSD 135
N+ S G+RG ++ + +PG SV L++++ L + D
Sbjct: 594 NYDSLGVRGLNMELFNDYPGNMHNIKSVLSLEIDIVLGEMD 634
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 0.51
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 155 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 277
LR L E NL+ + ++ +EQE+ + +++ S+K+ E+
Sbjct: 123 LRALQEESANLRRQRENRLREEQEQSKRRKQETPSSKISEL 163
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 170 AEQTNLKSILQEKIPKEQEKIREFRKKHG 256
AEQ I KIP E K+RE+ +++G
Sbjct: 33 AEQKEKDRIKALKIPYEDSKVREYLRRYG 61
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 158 RGLSAEQTNLKSILQEKIPKEQEKIREF 241
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 357 PSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 253
P S+ VS TRP IP+ PP + +S + P
Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 2.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 399 CCWHSGMDRP--RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 253
C W DRP R + PSSA+ T PL + PY+ S SPT++ P
Sbjct: 51 CIWP---DRPNMRGKKPSSAART----LSPLTGIVQPYLGSHPFSPTILSP 94
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 3.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 138 GHAFCNSTSLEDVILNRATSLK 73
GH FC+ S++D I N T +K
Sbjct: 196 GHIFCSPESIKDEIKNTLTFVK 217
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 3.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 203 PGEYFLNSSVQRLDLEVELSQSDMLSA 123
P E + N VQ+ DLE EL + D+L+A
Sbjct: 1069 PSEMYRNHLVQKADLEKELPE-DVLNA 1094
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 155 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 274
L+G E+ I E + +E++ FRK+ S++ E
Sbjct: 436 LKGREKEKDKDSGISSENVSNNREELPSFRKRSSSSRQSE 475
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 3.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 149 VLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKH 253
V+L A + S +E IPK++ E RKKH
Sbjct: 235 VILGEDEAMEEEALSEAEENIPKKKPDFNELRKKH 269
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 161 GLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTV 283
GL E+T+ + +EK+ KE E+ + K KV +V V
Sbjct: 523 GLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVV 563
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/69 (21%), Positives = 38/69 (55%)
Frame = +2
Query: 83 VALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 262
++ FR+T + ++ L + T+ + + +++ +++ Q +P+ +EKI+ F +K +
Sbjct: 725 ISQFRLTYNMILNLLRV---ETLRIEDM-IKRSFSENVNQTLVPQHEEKIKSFEEKLSAL 780
Query: 263 KVGEVTVDM 289
K VD+
Sbjct: 781 KKEMSDVDL 789
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 164 LSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 265
++ E ++ I+Q K KE++KIR GS+K
Sbjct: 353 VAVELLDVNEIMQTKREKEEKKIRRNLSLSGSSK 386
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -3
Query: 336 EVSQTRPLIPRMPPYIISTVTSPTLVEP 253
+VSQ++P+ +PP +++++ + EP
Sbjct: 187 QVSQSQPIQQLLPPDVLASIRADVTREP 214
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 348 ASSTEVSQTRPLIPRMPPYIIST 280
ASST SQT PL P P + ST
Sbjct: 309 ASSTNDSQTTPLPPPPPVAVNST 331
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 378 DRPRKRIPSSASSTEVSQTRPLIP 307
DRP R PSS S + V T P P
Sbjct: 574 DRPVSRRPSSTSRSSVKITGPSSP 597
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 221 QEKIREFRKKHGSTKVGEVTVDMMYGGMR 307
++++ E++KK G + V V +GG+R
Sbjct: 165 EKRVEEYKKKFGEDESVPVPVPDFWGGIR 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,421
Number of Sequences: 5004
Number of extensions: 33833
Number of successful extensions: 159
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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